Experiment set10H21 for Pseudomonas stutzeri RCH2

Compare to:

Sodium D-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
Psest_0152 -7.6 -5.2 Imidazoleglycerol-phosphate dehydratase compare
Psest_3866 -6.7 -17.3 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0508 -6.6 -11.0 gamma-glutamyl phosphate reductase compare
Psest_3818 -6.5 -9.0 endoribonuclease L-PSP, putative compare
Psest_3647 -6.5 -6.3 Indole-3-glycerol phosphate synthase compare
Psest_3650 -6.4 -14.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3384 -6.4 -7.6 glutamate 5-kinase compare
Psest_2591 -6.3 -4.4 3-isopropylmalate dehydratase, large subunit compare
Psest_2578 -6.2 -15.1 O-succinylhomoserine sulfhydrylase compare
Psest_0153 -6.2 -11.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0279 -6.1 -8.3 methionine biosynthesis protein MetW compare
Psest_0062 -6.0 -14.1 tryptophan synthase, alpha subunit compare
Psest_2590 -6.0 -1.9 3-isopropylmalate dehydratase, small subunit compare
Psest_3648 -5.9 -10.7 anthranilate phosphoribosyltransferase compare
Psest_3298 -5.9 -14.3 histidinol dehydrogenase compare
Psest_3864 -5.9 -17.0 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_2584 -5.9 -7.0 Phosphoribosylanthranilate isomerase compare
Psest_0280 -5.5 -17.5 homoserine O-acetyltransferase compare
Psest_3299 -5.5 -17.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3943 -5.5 -5.3 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3944 -5.4 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0326 -5.4 -17.7 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0063 -5.4 -13.9 tryptophan synthase, beta subunit compare
Psest_0313 -5.3 -6.3 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0155 -5.3 -7.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_2589 -5.2 -14.8 3-isopropylmalate dehydrogenase compare
Psest_0687 -5.1 -12.3 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0325 -5.1 -13.5 Putative threonine efflux protein compare
Psest_1473 -4.8 -10.7 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0951 -4.7 -14.7 FAD/FMN-containing dehydrogenases compare
Psest_3649 -4.6 -13.9 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1295 -4.3 -7.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0954 -4.2 -12.4 Fe-S oxidoreductase compare
Psest_2579 -4.0 -2.8 amidophosphoribosyltransferase compare
Psest_3998 -4.0 -9.9 glutamate--cysteine ligase compare
Psest_4085 -3.8 -20.9 Biotin carboxylase compare
Psest_2088 -3.8 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_0952 -3.6 -4.7 Uncharacterized conserved protein compare
Psest_0953 -3.5 -8.2 iron-sulfur cluster-binding protein compare
Psest_3721 -3.5 -9.4 Malic enzyme compare
Psest_4084 -3.5 -18.0 oxaloacetate decarboxylase alpha subunit compare
Psest_3297 -3.5 -14.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_2329 -3.5 -20.3 Transcriptional regulator compare
Psest_0411 -3.2 -13.1 biotin synthetase compare
Psest_1037 -3.1 -3.4 acetolactate synthase, small subunit compare
Psest_4086 -3.1 -12.3 Transcriptional regulator compare
Psest_3338 -3.1 -2.9 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3226 -3.0 -1.9 Predicted membrane protein compare
Psest_1012 -2.9 -6.9 Signal transduction histidine kinase compare
Psest_0327 -2.8 -5.6 Transcriptional regulator compare
Psest_2104 -2.8 -1.9 IscR-regulated protein YhgI compare
Psest_1772 -2.7 -5.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1292 -2.5 -9.9 monothiol glutaredoxin, Grx4 family compare
Psest_4191 -2.5 -4.2 Transcriptional regulator compare
Psest_3840 -2.4 -4.9 D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) (from data) conserved
Psest_2585 -2.4 -1.6 pseudouridylate synthase I compare
Psest_1013 -2.4 -2.3 phosphoribosylamine--glycine ligase compare
Psest_0414 -2.4 -5.7 biotin biosynthesis protein BioC compare
Psest_3810 -2.4 -1.6 orotate phosphoribosyltransferase compare
Psest_0955 -2.3 -6.2 D,L-lactate:H+ symporter (from data) compare
Psest_3841 -2.3 -11.3 D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) (from data) conserved
Psest_1474 -2.2 -2.2 phosphoribosylaminoimidazole synthetase compare
Psest_0306 -2.2 -15.3 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_2333 -2.2 -1.8 Protein of unknown function (DUF3359). compare
Psest_0412 -2.2 -11.2 8-amino-7-oxononanoate synthase compare
Psest_1686 -2.1 -3.7 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3159 -2.0 -7.3 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0413 -2.0 -8.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0489 -2.0 -2.3 phosphoserine phosphatase SerB compare
Psest_0415 -2.0 -5.4 dethiobiotin synthase compare
Psest_2651 -1.9 -6.2 DNA topoisomerase I, bacterial compare
Psest_0442 -1.9 -3.1 ATPases of the AAA+ class compare
Psest_2527 -1.9 -8.3 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_3839 -1.9 -6.3 D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) (from data) conserved
Psest_3762 -1.8 -6.4 iron donor protein CyaY compare
Psest_3322 -1.8 -14.6 TIGR02099 family protein compare
Psest_1277 -1.8 -9.9 2-isopropylmalate synthase, yeast type compare
Psest_3843 -1.7 -9.5 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3351 -1.7 -5.2 peptide chain release factor 3 compare
Psest_3123 -1.7 -3.0 dihydroorotase, homodimeric type compare
Psest_1496 -1.7 -1.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_4310 -1.6 -2.5 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1947 -1.6 -1.1 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3178 -1.6 -2.8 formyltetrahydrofolate deformylase compare
Psest_0297 -1.6 -5.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2323 -1.6 -10.5 Uncharacterized protein conserved in archaea compare
Psest_4044 -1.6 -3.6 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1695 -1.6 -3.6 Tfp pilus assembly protein PilZ compare
Psest_2327 -1.6 -6.0 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_3047 -1.5 -1.5 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_2325 -1.5 -8.5 alpha-L-glutamate ligase-related protein compare
Psest_1505 -1.5 -2.4 Organic radical activating enzymes compare
Psest_1724 -1.4 -4.1 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0296 -1.4 -8.4 glutathione synthetase, prokaryotic compare
Psest_0170 -1.4 -6.1 5,10-methenyltetrahydrofolate synthetase compare
Psest_2809 -1.4 -3.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1870 -1.4 -1.9 Transcriptional regulators compare
Psest_2744 -1.4 -1.4 Uncharacterized conserved protein compare
Psest_0722 -1.3 -6.2 Predicted ATPase compare
Psest_2648 -1.3 -1.5 hypothetical protein compare
Psest_2324 -1.3 -10.0 hypothetical protein compare
Psest_2090 -1.3 -2.9 Protein of unknown function (DUF2970). compare
Psest_3301 -1.2 -3.9 Predicted transcriptional regulator, BolA superfamily compare
Psest_2532 -1.2 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_1999 -1.2 -1.3 pseudouridine synthase compare
Psest_4219 -1.2 -2.5 DNA polymerase I compare
Psest_0958 -1.2 -5.0 Oligoketide cyclase/lipid transport protein compare
Psest_2530 -1.1 -3.6 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_4201 -1.1 -2.1 general secretion pathway protein F compare
Psest_0193 -1.1 -1.0 conserved hypothetical protein compare
Psest_3287 -1.1 -4.2 Type II secretory pathway, component PulF compare
Psest_3458 -1.1 -2.3 hypothetical protein compare
Psest_0284 -1.1 -7.1 pyridoxal phosphate enzyme, YggS family compare
Psest_3288 -1.1 -6.9 type IV-A pilus assembly ATPase PilB compare
Psest_2810 -1.0 -3.0 5'/3'-nucleotidase SurE compare
Psest_1087 -1.0 -1.4 uncharacterized peroxidase-related enzyme compare
Psest_3720 -1.0 -8.4 penicillin-binding protein, 1A family compare
Psest_1463 -1.0 -1.1 SufE protein probably involved in Fe-S center assembly compare
Psest_2545 -1.0 -2.7 recombination protein RecR compare
Psest_0491 -1.0 -6.2 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_2946 -1.0 -3.0 septum site-determining protein MinD compare
Psest_2988 -1.0 -5.0 aspartate kinase, monofunctional class compare
Psest_2531 -1.0 -6.9 cytochrome c oxidase accessory protein FixG compare
Psest_4364 -1.0 -3.6 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_2331 -1.0 -6.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_2798 -1.0 -2.3 Truncated hemoglobins compare
Psest_3339 -1.0 -4.1 Signal transduction histidine kinase compare
Psest_4124 -1.0 -1.9 hypothetical protein compare
Psest_1535 -0.9 -3.2 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_0393 -0.9 -4.2 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3490 -0.9 -2.6 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_1527 -0.9 -6.2 Na+/proline symporter compare
Psest_2637 -0.9 -1.2 putative methyltransferase, YaeB/AF_0241 family compare
Psest_3456 -0.9 -1.1 RNA polymerase sigma factor, sigma-70 family compare
Psest_3718 -0.9 -4.0 Tfp pilus assembly protein PilN compare
Psest_1313 -0.9 -1.1 Uncharacterized conserved small protein compare
Psest_3842 -0.8 -1.7 Transcriptional regulators compare
Psest_0718 -0.8 -2.7 nicotinate-nucleotide pyrophosphorylase compare
Psest_0706 -0.8 -5.1 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_3884 -0.8 -0.9 Signal transduction histidine kinase compare
Psest_1813 -0.8 -5.5 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0719 -0.8 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_2850 -0.8 -0.7 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3988 -0.8 -4.3 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0300 -0.8 -3.9 Methyl-accepting chemotaxis protein compare
Psest_0212 -0.8 -1.6 exodeoxyribonuclease V, gamma subunit compare
Psest_2316 -0.8 -6.0 phosphoenolpyruvate synthase compare
Psest_1366 -0.8 -1.5 hypothetical protein compare
Psest_2955 -0.8 -1.8 Predicted transcriptional regulator with C-terminal CBS domains compare
Psest_3664 -0.8 -1.0 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_4083 -0.8 -6.0 Predicted permease compare
Psest_2718 -0.8 -1.1 hypothetical protein compare
Psest_2708 -0.8 -5.2 transaldolase compare
Psest_2037 -0.8 -3.6 uroporphyrin-III C-methyltransferase compare
Psest_3286 -0.8 -2.6 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_4370 -0.8 -2.1 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0277 -0.8 -1.1 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_3717 -0.8 -3.5 Tfp pilus assembly protein PilO compare
Psest_3449 -0.8 -1.1 DJ-1 family protein compare
Psest_2864 -0.8 -2.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2120 -0.8 -1.1 Transcriptional regulator compare
Psest_0154 -0.8 -2.1 Uncharacterized conserved protein compare
Psest_1279 -0.8 -1.9 hypothetical protein compare
Psest_1111 -0.7 -2.0 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3375 -0.7 -3.9 prepilin-type N-terminal cleavage/methylation domain compare
Psest_3767 -0.7 -2.7 tyrosine recombinase XerC compare
Psest_3995 -0.7 -1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3044 -0.7 -3.7 deoxycytidine triphosphate deaminase compare
Psest_3716 -0.7 -4.3 Tfp pilus assembly protein PilP compare
Psest_2862 -0.7 -4.6 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_0028 -0.7 -3.1 Coproporphyrinogen III oxidase compare
Psest_0138 -0.7 -4.5 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_4097 -0.7 -4.7 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3323 -0.7 -2.9 ribonuclease, Rne/Rng family compare
Psest_2557 -0.7 -1.4 Protein of unknown function (DUF2474). compare
Psest_1516 -0.7 -1.4 Uncharacterized lipoprotein compare
Psest_1951 -0.7 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_2714 -0.7 -1.3 7-cyano-7-deazaguanine reductase compare
Psest_2845 -0.7 -4.2 [Protein-PII] uridylyltransferase compare
Psest_0136 -0.7 -5.1 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_2680 -0.7 -3.1 transcriptional regulator, BolA protein family compare
Psest_0208 -0.7 -4.9 Uncharacterized protein conserved in bacteria compare
Psest_3921 -0.7 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_2442 -0.7 -1.9 hypothetical protein compare
Psest_3790 -0.7 -4.1 Cytochrome c5 compare
Psest_0724 -0.7 -3.0 Deoxyinosine 3'endonuclease (endonuclease V) compare
Psest_2872 -0.7 -1.1 protein RecA compare
Psest_3766 -0.7 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_1979 -0.7 -3.2 Nucleotidyltransferase/DNA polymerase involved in DNA repair compare
Psest_2855 -0.7 -1.3 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3806 -0.7 -3.0 Phosphomannomutase compare
Psest_3474 -0.7 -2.3 Short-chain dehydrogenases of various substrate specificities compare
Psest_0097 -0.7 -1.2 phosphonates metabolism transcriptional regulator PhnF compare
Psest_2892 -0.7 -2.4 Transcriptional regulator compare
Psest_1506 -0.7 -2.9 queuosine biosynthesis protein QueC compare
Psest_0024 -0.7 -3.9 LysM domain. compare
Psest_3573 -0.6 -2.4 dTDP-4-dehydrorhamnose reductase compare
Psest_0445 -0.6 -4.4 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3962 -0.6 -0.8 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_0705 -0.6 -4.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium D-Lactate in Pseudomonas stutzeri RCH2

For carbon source Sodium D-Lactate across organisms