Experiment set10H20 for Pseudomonas stutzeri RCH2

Compare to:

Trisodium citrate dihydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
Psest_0309 +1.3 1.5 RND family efflux transporter, MFP subunit compare
Psest_3881 +1.1 2.5 hypothetical protein compare
Psest_4406 +1.0 1.5 hypothetical protein compare
Psest_2150 +1.0 2.1 DNA polymerase LigD, polymerase domain compare
Psest_3476 +0.9 2.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1601 +0.9 2.5 Signal transduction histidine kinase compare
Psest_1166 +0.9 1.6 transcriptional regulator, ArgP family compare
Psest_0584 +0.9 3.6 hypothetical protein compare
Psest_3937 +0.9 2.0 ATP-dependent protease HslVU, ATPase subunit compare
Psest_4128 +0.8 1.7 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0592 +0.8 3.6 hypothetical protein compare
Psest_2744 +0.8 1.0 Uncharacterized conserved protein compare
Psest_0193 +0.7 1.0 conserved hypothetical protein compare
Psest_2964 +0.7 4.1 flagellar basal-body rod protein FlgF compare
Psest_1738 +0.7 2.6 flagellar biosynthetic protein FlhF compare
Psest_3301 +0.7 2.9 Predicted transcriptional regulator, BolA superfamily compare
Psest_2067 +0.7 0.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3415 +0.7 5.9 hypothetical protein compare
Psest_3031 +0.7 0.7 hypothetical protein compare
Psest_1719 +0.7 3.4 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_0243 +0.7 1.7 hypothetical protein compare
Psest_3045 +0.7 2.0 Cold shock proteins compare
Psest_1421 +0.7 2.7 Glutathione S-transferase compare
Psest_4325 +0.7 1.7 hypothetical protein compare
Psest_2720 +0.6 1.9 Enoyl-CoA hydratase/carnithine racemase compare
Psest_2726 +0.6 0.7 Rhodanese-related sulfurtransferase compare
Psest_0061 +0.6 2.3 hypothetical protein compare
Psest_1960 +0.6 2.4 Bacterial protein of unknown function (DUF903). compare
Psest_2384 +0.6 1.5 Uncharacterized protein conserved in bacteria compare
Psest_4010 +0.6 1.1 peroxiredoxin, OsmC subfamily compare
Psest_3185 +0.6 2.1 MoxR-like ATPases compare
Psest_1840 +0.6 5.7 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_2243 +0.6 0.7 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3106 +0.6 2.9 Predicted outer membrane protein compare
Psest_2981 +0.6 0.8 sodium pump decarboxylases, gamma subunit compare
Psest_2650 +0.6 1.7 hypothetical protein compare
Psest_1723 +0.6 3.2 flagellar export protein FliJ compare
Psest_0296 +0.6 3.5 glutathione synthetase, prokaryotic compare
Psest_3202 +0.6 1.9 Flavodoxins compare
Psest_1349 +0.6 1.6 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_1783 +0.6 2.1 Predicted transporter component compare
Psest_1595 +0.6 1.3 Copper chaperone compare
Psest_3500 +0.6 1.9 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Psest_1879 +0.6 1.2 Trk-type K+ transport systems, membrane components compare
Psest_4161 +0.6 1.4 Flagellar basal body-associated protein compare
Psest_1663 +0.6 1.6 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_4258 +0.5 2.5 ABC-type uncharacterized transport system, auxiliary component compare
Psest_3014 +0.5 0.8 cob(I)alamin adenosyltransferase compare
Psest_2449 +0.5 3.1 Predicted membrane protein compare
Psest_2274 +0.5 2.4 coenzyme PQQ biosynthesis protein A compare
Psest_1065 +0.5 1.0 hypothetical protein compare
Psest_2136 +0.5 4.0 Predicted homoserine dehydrogenase compare
Psest_0064 +0.5 1.7 Transcriptional regulator compare
Psest_4371 +0.5 0.9 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_2963 +0.5 2.8 flagellar basal-body rod protein FlgG, Gram-negative bacteria compare
Psest_0632 +0.5 1.2 hypothetical protein compare
Psest_1741 +0.5 0.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4221 +0.5 1.3 homoserine kinase, Neisseria type compare
Psest_1195 +0.5 1.6 xanthine permease compare
Psest_2715 +0.5 2.8 ABC-type polysaccharide/polyol phosphate export systems, permease component compare
Psest_3488 +0.5 1.9 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3463 +0.5 3.2 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_2538 +0.5 1.2 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1765 +0.5 3.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1292 +0.5 3.2 monothiol glutaredoxin, Grx4 family compare
Psest_3287 +0.5 2.3 Type II secretory pathway, component PulF compare
Psest_1722 +0.5 3.5 flagellar protein export ATPase FliI compare
Psest_2046 +0.5 1.2 hypothetical protein compare
Psest_3005 +0.5 1.5 Fructose-2,6-bisphosphatase compare
Psest_1740 +0.5 3.0 RNA polymerase sigma factor, FliA/WhiG family compare
Psest_1729 +0.5 2.5 flagellar motor switch protein FliM compare
Psest_4310 +0.5 0.6 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_3718 +0.5 3.0 Tfp pilus assembly protein PilN compare
Psest_1946 +0.5 1.9 Protein of unknown function (DUF2835). compare
Psest_2752 +0.5 1.3 Uncharacterized protein conserved in bacteria compare
Psest_0227 +0.5 1.5 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_1428 +0.5 1.6 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_2489 +0.5 3.0 branched-chain amino acid uptake carrier compare
Psest_3979 +0.5 1.3 Fructose-2,6-bisphosphatase compare
Psest_2906 +0.5 1.6 tRNA_Thr_CGT compare
Psest_2975 +0.5 1.5 tRNA_Arg_CCT compare
Psest_2965 +0.5 3.9 fagellar hook-basal body proteins compare
Psest_3230 +0.4 2.1 Uncharacterized conserved protein compare
Psest_0181 +0.4 2.5 glycine cleavage system T protein compare
Psest_2110 +0.4 1.5 hypothetical protein compare
Psest_1103 +0.4 1.5 GTP-binding protein YchF compare
Psest_2123 +0.4 1.3 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_3426 +0.4 2.1 Uncharacterized protein conserved in bacteria compare
Psest_2637 +0.4 0.5 putative methyltransferase, YaeB/AF_0241 family compare
Psest_1283 +0.4 2.0 Membrane proteins related to metalloendopeptidases compare
Psest_2723 +0.4 1.7 Uncharacterized conserved protein compare
Psest_0747 +0.4 2.1 Putative GTPases (G3E family) compare
Psest_0487 +0.4 2.1 Uncharacterized protein conserved in bacteria compare
Psest_0086 +0.4 1.3 hypothetical protein compare
Psest_1718 +0.4 1.4 flagellar hook-basal body complex protein FliE compare
Psest_0137 +0.4 2.4 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_1460 +0.4 1.8 Cytochrome c553 compare
Psest_3494 +0.4 1.5 hypothetical protein compare
Psest_3206 +0.4 1.4 Uncharacterized protein conserved in bacteria compare
Psest_2092 +0.4 1.3 hypothetical protein compare
Psest_2500 +0.4 1.1 hypothetical protein compare
Psest_3754 +0.4 1.1 Uncharacterized protein involved in response to NO compare
Psest_2153 +0.4 1.9 formate dehydrogenase, gamma subunit compare
Psest_0915 +0.4 1.8 hypothetical protein compare
Psest_2961 +0.4 1.4 Flagellar basal-body P-ring protein compare
Psest_4043 +0.4 1.5 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3780 +0.4 1.5 Transcriptional regulator compare
Psest_0923 +0.4 2.6 Glutaredoxin, GrxC family compare
Psest_2448 +0.4 1.8 AraC-type DNA-binding domain-containing proteins compare
Psest_0191 +0.4 0.7 PAS domain S-box compare
Psest_1817 +0.4 1.7 hypothetical protein compare
Psest_0640 +0.4 1.9 Uncharacterized conserved protein compare
Psest_3853 +0.4 1.1 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_2769 +0.4 2.1 hypothetical protein compare
Psest_0199 +0.4 2.5 PAS domain S-box compare
Psest_1271 +0.4 2.5 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family compare
Psest_1317 +0.4 2.4 phosphonate ABC transporter, permease protein PhnE compare
Psest_0601 +0.4 1.6 hypothetical protein compare
Psest_1142 +0.4 1.7 Uncharacterized protein conserved in bacteria compare
Psest_4041 +0.4 2.4 hypothetical protein compare
Psest_3550 +0.4 1.2 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_3048 +0.4 1.2 hypothetical protein compare
Psest_1625 +0.4 2.2 hypothetical protein compare
Psest_3710 +0.4 3.1 glutamate synthase small subunit family protein, proteobacterial compare
Psest_3812 +0.4 1.2 Uncharacterized protein conserved in bacteria compare
Psest_1585 +0.4 1.8 amidohydrolase compare
Psest_1161 +0.4 1.0 E3 Ubiquitin ligase. compare
Psest_3554 +0.4 1.0 Uncharacterized protein conserved in bacteria compare
Psest_3110 +0.4 1.3 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1429 +0.4 1.6 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit compare
Psest_3546 +0.4 0.8 Phosphatidylglycerophosphatase A and related proteins compare
Psest_4151 +0.4 1.1 Flagellar hook capping protein compare
Psest_1721 +0.4 1.5 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_2222 +0.4 2.1 ribose-phosphate pyrophosphokinase compare
Psest_0050 +0.4 1.2 Predicted acetyltransferase compare
Psest_0992 +0.4 1.5 Uncharacterized protein conserved in bacteria compare
Psest_3247 +0.4 1.1 Uncharacterized membrane protein compare
Psest_3317 +0.4 1.5 Phosphotransferase System HPr (HPr) Family compare
Psest_1505 +0.4 0.9 Organic radical activating enzymes compare
Psest_3145 +0.4 0.9 hypothetical protein compare
Psest_1538 +0.4 2.2 Uncharacterized protein conserved in bacteria compare
Psest_3787 +0.4 1.4 Domain of Unknown Function (DUF1080). compare
Psest_3250 +0.4 1.4 Rho termination factor, N-terminal domain. compare
Psest_4082 +0.4 1.1 hypothetical protein compare
Psest_0778 +0.4 1.2 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin compare
Psest_1901 +0.4 0.9 hypothetical protein compare
Psest_4239 +0.4 2.7 Cytochrome b compare
Psest_1720 +0.4 2.4 flagellar motor switch protein FliG compare
Psest_2681 +0.4 1.3 Uncharacterized protein conserved in bacteria compare
Psest_0577 +0.4 2.3 Predicted transcriptional regulators compare
Psest_1951 +0.4 1.0 Uncharacterized protein conserved in bacteria compare
Psest_3136 +0.4 1.8 Putative Mg2+ and Co2+ transporter CorB compare
Psest_1734 +0.4 1.6 flagellar biosynthetic protein FliR compare
Psest_1563 +0.4 0.9 Protein of unknown function (DUF548). compare
Psest_4241 +0.4 1.8 hypothetical protein compare
Psest_3416 +0.4 2.3 Predicted ATPase (AAA+ superfamily) compare
Psest_3231 +0.4 1.1 hypothetical protein compare
Psest_2478 +0.3 1.9 Na+/serine symporter compare
Psest_3174 +0.3 2.9 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2544 +0.3 1.5 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_0381 +0.3 1.7 hypothetical protein compare
Psest_2122 +0.3 0.7 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1399 +0.3 2.2 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_3717 +0.3 2.1 Tfp pilus assembly protein PilO compare
Psest_3400 +0.3 0.8 Copper resistance protein D. compare
Psest_0230 +0.3 1.8 Uncharacterized BCR, YitT family COG1284. compare
Psest_1306 +0.3 0.6 hypothetical protein compare
Psest_1395 +0.3 2.1 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_2061 +0.3 1.6 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_4168 +0.3 1.2 Flagellar FliJ protein. compare
Psest_3750 +0.3 1.9 Predicted signal transduction protein with a C-terminal ATPase domain compare
Psest_3450 +0.3 2.0 Permeases compare
Psest_1794 +0.3 1.5 Flagellar motor protein compare
Psest_0505 +0.3 1.1 Putative effector of murein hydrolase compare
Psest_0133 +0.3 0.7 type VI secretion protein, VC_A0107 family compare
Psest_3707 +0.3 1.1 Transcriptional regulator compare
Psest_3270 +0.3 1.1 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_0101 +0.3 1.4 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_1997 +0.3 1.1 6-phosphogluconolactonase compare
Psest_1360 +0.3 1.1 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_3007 +0.3 1.8 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase compare
Psest_1458 +0.3 1.2 Uncharacterized protein conserved in bacteria compare
Psest_3215 +0.3 1.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_1512 +0.3 2.4 Predicted permease compare
Psest_2718 +0.3 0.8 hypothetical protein compare
Psest_4405 +0.3 0.6 hypothetical protein compare
Psest_1544 +0.3 1.9 single-stranded-DNA-specific exonuclease RecJ compare
Psest_1737 +0.3 1.6 flagellar biosynthesis protein FlhA compare
Psest_2971 +0.3 1.7 flagella basal body P-ring formation protein FlgA compare
Psest_3321 +0.3 2.2 Predicted amidohydrolase compare
Psest_1540 +0.3 0.5 biotin-dependent carboxylase uncharacterized domain compare
Psest_2999 +0.3 1.4 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_1623 +0.3 1.2 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2349 +0.3 1.5 urea carboxylase-associated protein 1 compare
Psest_0758 +0.3 1.9 Lactoylglutathione lyase and related lyases compare
Psest_2126 +0.3 1.3 Transcriptional regulators compare
Psest_3024 +0.3 1.5 cytochrome d oxidase, subunit II (cydB) compare
Psest_0224 +0.3 1.7 Transcriptional regulator compare
Psest_2581 +0.3 1.0 Uncharacterized protein conserved in bacteria compare
Psest_2586 +0.3 2.9 FimV N-terminal domain compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas stutzeri RCH2

For carbon source Trisodium citrate dihydrate across organisms