Experiment set10H17 for Pseudomonas stutzeri RCH2

Compare to:

Sodium Fumarate dibasic carbon source

200 most important genes:

  gene name fitness t score description  
Psest_3647 -6.9 -4.8 Indole-3-glycerol phosphate synthase compare
Psest_0508 -6.9 -8.2 gamma-glutamyl phosphate reductase compare
Psest_3650 -6.8 -10.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3648 -6.7 -6.6 anthranilate phosphoribosyltransferase compare
Psest_0152 -6.7 -6.5 Imidazoleglycerol-phosphate dehydratase compare
Psest_3866 -6.4 -15.9 threonine ammonia-lyase, biosynthetic, long form compare
Psest_2591 -6.2 -4.2 3-isopropylmalate dehydratase, large subunit compare
Psest_2578 -6.1 -13.5 O-succinylhomoserine sulfhydrylase compare
Psest_0279 -6.0 -7.2 methionine biosynthesis protein MetW compare
Psest_2584 -6.0 -5.9 Phosphoribosylanthranilate isomerase compare
Psest_0155 -5.9 -5.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_2590 -5.9 -2.1 3-isopropylmalate dehydratase, small subunit compare
Psest_3864 -5.8 -15.5 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0153 -5.8 -13.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_1473 -5.8 -7.9 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0062 -5.8 -12.3 tryptophan synthase, alpha subunit compare
Psest_3384 -5.7 -9.6 glutamate 5-kinase compare
Psest_0063 -5.7 -11.5 tryptophan synthase, beta subunit compare
Psest_3943 -5.5 -3.8 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3944 -5.4 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3298 -5.4 -13.8 histidinol dehydrogenase compare
Psest_0687 -5.3 -9.5 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0280 -5.3 -17.8 homoserine O-acetyltransferase compare
Psest_3299 -5.2 -17.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0326 -4.8 -14.6 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0325 -4.8 -13.1 Putative threonine efflux protein compare
Psest_0313 -4.8 -7.3 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2589 -4.7 -13.3 3-isopropylmalate dehydrogenase compare
Psest_3649 -4.6 -13.2 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3998 -4.5 -6.9 glutamate--cysteine ligase compare
Psest_3721 -4.4 -10.3 Malic enzyme compare
Psest_1037 -4.1 -4.2 acetolactate synthase, small subunit compare
Psest_3226 -4.0 -2.0 Predicted membrane protein compare
Psest_4270 -3.8 -12.2 TRAP transporter, DctM subunit compare
Psest_1657 -3.6 -2.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2579 -3.6 -4.9 amidophosphoribosyltransferase compare
Psest_1686 -3.6 -8.2 fatty acid/phospholipid synthesis protein PlsX compare
Psest_4268 -3.5 -13.8 tripartite ATP-independent periplasmic transporter solute receptor, DctP family conserved
Psest_4267 -3.5 -8.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains conserved
Psest_4269 -3.5 -11.6 C4-dicarboxylate transporter, DctQ subunit (from data) conserved
Psest_1295 -3.4 -8.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2329 -3.3 -15.9 Transcriptional regulator compare
Psest_1772 -3.2 -6.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0722 -3.2 -8.8 Predicted ATPase compare
Psest_2872 -3.1 -3.2 protein RecA compare
Psest_3818 -3.1 -10.2 endoribonuclease L-PSP, putative compare
Psest_0327 -3.0 -4.9 Transcriptional regulator compare
Psest_4266 -2.9 -10.9 Signal transduction histidine kinase regulating C4-dicarboxylate transport system compare
Psest_0999 -2.9 -2.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1012 -2.8 -6.4 Signal transduction histidine kinase compare
Psest_3297 -2.6 -11.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_2333 -2.5 -1.9 Protein of unknown function (DUF3359). compare
Psest_3129 -2.4 -2.1 tyrosine recombinase XerD compare
Psest_1013 -2.4 -1.7 phosphoribosylamine--glycine ligase compare
Psest_4191 -2.4 -4.8 Transcriptional regulator compare
Psest_0489 -2.2 -2.1 phosphoserine phosphatase SerB compare
Psest_3810 -2.2 -1.5 orotate phosphoribosyltransferase compare
Psest_0442 -2.2 -2.1 ATPases of the AAA+ class compare
Psest_1474 -2.1 -2.1 phosphoribosylaminoimidazole synthetase compare
Psest_3159 -2.0 -6.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1659 -2.0 -3.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0498 -2.0 -1.5 ribosome small subunit-dependent GTPase A compare
Psest_4078 -1.9 -3.6 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3850 -1.9 -1.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2651 -1.9 -5.2 DNA topoisomerase I, bacterial compare
Psest_1660 -1.8 -2.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2764 -1.8 -2.1 hypothetical protein compare
Psest_3988 -1.8 -7.4 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_1655 -1.7 -4.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1656 -1.7 -2.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1496 -1.7 -1.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_1661 -1.7 -1.9 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_4219 -1.7 -2.9 DNA polymerase I compare
Psest_4044 -1.6 -2.7 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1947 -1.6 -1.1 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2088 -1.5 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_2104 -1.4 -2.1 IscR-regulated protein YhgI compare
Psest_1505 -1.4 -2.3 Organic radical activating enzymes compare
Psest_2946 -1.4 -3.4 septum site-determining protein MinD compare
Psest_0958 -1.4 -6.2 Oligoketide cyclase/lipid transport protein compare
Psest_2083 -1.4 -5.3 Putative sterol carrier protein compare
Psest_1704 -1.4 -1.5 Dehydrogenases (flavoproteins) compare
Psest_1277 -1.3 -8.7 2-isopropylmalate synthase, yeast type compare
Psest_2862 -1.3 -7.3 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_3322 -1.3 -10.7 TIGR02099 family protein compare
Psest_1724 -1.3 -3.3 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_4134 -1.2 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_2944 -1.2 -1.3 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_2810 -1.2 -4.1 5'/3'-nucleotidase SurE compare
Psest_1695 -1.1 -2.9 Tfp pilus assembly protein PilZ compare
Psest_0718 -1.1 -3.8 nicotinate-nucleotide pyrophosphorylase compare
Psest_2090 -1.1 -3.3 Protein of unknown function (DUF2970). compare
Psest_1322 -1.1 -2.4 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_0170 -1.1 -3.8 5,10-methenyltetrahydrofolate synthetase compare
Psest_1292 -1.1 -5.8 monothiol glutaredoxin, Grx4 family compare
Psest_0491 -1.1 -6.2 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0028 -1.1 -3.9 Coproporphyrinogen III oxidase compare
Psest_3806 -1.1 -4.8 Phosphomannomutase compare
Psest_3123 -1.1 -2.4 dihydroorotase, homodimeric type compare
Psest_2809 -1.1 -2.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3766 -1.0 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3288 -1.0 -6.8 type IV-A pilus assembly ATPase PilB compare
Psest_3351 -1.0 -3.7 peptide chain release factor 3 compare
Psest_1814 -1.0 -6.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2566 -1.0 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_4298 -1.0 -1.2 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0284 -1.0 -7.6 pyridoxal phosphate enzyme, YggS family compare
Psest_3323 -1.0 -3.8 ribonuclease, Rne/Rng family compare
Psest_0175 -1.0 -5.0 Xaa-Pro aminopeptidase compare
Psest_2532 -1.0 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1540 -1.0 -1.3 biotin-dependent carboxylase uncharacterized domain compare
Psest_2718 -0.9 -1.4 hypothetical protein compare
Psest_2325 -0.9 -6.1 alpha-L-glutamate ligase-related protein compare
Psest_2382 -0.9 -6.3 coenzyme PQQ biosynthesis probable peptidase PqqF compare
Psest_2001 -0.9 -1.3 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2324 -0.9 -7.1 hypothetical protein compare
Psest_2719 -0.9 -1.8 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_2863 -0.9 -4.3 Transcriptional regulator compare
Psest_1366 -0.9 -1.3 hypothetical protein compare
Psest_2531 -0.9 -5.9 cytochrome c oxidase accessory protein FixG compare
Psest_2327 -0.9 -4.1 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_3816 -0.8 -1.0 DNA-directed RNA polymerase, omega subunit compare
Psest_2323 -0.8 -6.3 Uncharacterized protein conserved in archaea compare
Psest_2527 -0.8 -4.3 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_1270 -0.8 -3.4 hypothetical protein compare
Psest_4003 -0.8 -3.5 TIGR00153 family protein compare
Psest_3664 -0.8 -0.9 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_3995 -0.8 -1.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0115 -0.8 -1.2 Predicted integral membrane protein compare
Psest_2321 -0.8 -4.0 methylisocitrate lyase compare
Psest_3843 -0.8 -5.0 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0740 -0.8 -1.4 Transcriptional regulator compare
Psest_3367 -0.8 -1.3 translation initation factor SUI1, putative, prokaryotic compare
Psest_3458 -0.8 -2.2 hypothetical protein compare
Psest_3114 -0.8 -4.1 electron transport complex, RnfABCDGE type, C subunit compare
Psest_1000 -0.8 -5.3 PAS domain S-box compare
Psest_0706 -0.8 -5.4 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_1506 -0.7 -3.7 queuosine biosynthesis protein QueC compare
Psest_3419 -0.7 -3.7 Predicted transcriptional regulators compare
Psest_3715 -0.7 -5.8 type IV pilus secretin (or competence protein) PilQ compare
Psest_3573 -0.7 -3.1 dTDP-4-dehydrorhamnose reductase compare
Psest_2530 -0.7 -2.9 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_2285 -0.7 -2.1 ATP-dependent protease La compare
Psest_0998 -0.7 -1.5 poly(A) polymerase compare
Psest_3375 -0.7 -3.9 prepilin-type N-terminal cleavage/methylation domain compare
Psest_0300 -0.7 -3.7 Methyl-accepting chemotaxis protein compare
Psest_3910 -0.7 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_1762 -0.7 -0.9 cytochrome c-type biogenesis protein CcmI compare
Psest_1717 -0.7 -2.1 benzoate transporter compare
Psest_3484 -0.7 -3.2 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_3719 -0.7 -4.4 type IV pilus assembly protein PilM compare
Psest_0212 -0.7 -1.0 exodeoxyribonuclease V, gamma subunit compare
Psest_1677 -0.7 -2.1 Protein-tyrosine-phosphatase compare
Psest_2037 -0.7 -3.6 uroporphyrin-III C-methyltransferase compare
Psest_3716 -0.7 -3.4 Tfp pilus assembly protein PilP compare
Psest_3296 -0.7 -0.9 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_0708 -0.7 -1.3 outer membrane assembly lipoprotein YfiO compare
Psest_0309 -0.7 -0.6 RND family efflux transporter, MFP subunit compare
Psest_3039 -0.7 -0.8 periplasmic nitrate reductase, NapE protein compare
Psest_1640 -0.7 -5.4 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3895 -0.7 -2.4 hypothetical protein compare
Psest_2850 -0.7 -1.0 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3084 -0.7 -1.5 methyltransferase, putative compare
Psest_2894 -0.7 -1.8 addiction module antidote protein, HigA family compare
Psest_0292 -0.6 -1.6 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_0297 -0.6 -2.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4363 -0.6 -3.2 ATPases involved in chromosome partitioning compare
Psest_2892 -0.6 -2.3 Transcriptional regulator compare
Psest_3809 -0.6 -1.8 hypothetical protein compare
Psest_1008 -0.6 -1.0 hypothetical protein compare
Psest_0609 -0.6 -1.3 hypothetical protein compare
Psest_2253 -0.6 -1.6 small redox-active disulfide protein 2 compare
Psest_0285 -0.6 -4.0 pilus retraction protein PilT compare
Psest_1056 -0.6 -1.6 2-isopropylmalate synthase, bacterial type compare
Psest_1800 -0.6 -3.0 anion transporter compare
Psest_1238 -0.6 -3.6 Predicted membrane protein/domain compare
Psest_3180 -0.6 -3.7 Exonuclease I compare
Psest_1006 -0.6 -3.9 dTDP-4-dehydrorhamnose reductase compare
Psest_0987 -0.6 -1.2 Predicted periplasmic or secreted lipoprotein compare
Psest_0359 -0.6 -1.2 Transcriptional regulators compare
Psest_1054 -0.6 -3.2 Diaminopimelate decarboxylase compare
Psest_1907 -0.6 -1.1 hypothetical protein compare
Psest_0066 -0.6 -0.9 Protein of unknown function (DUF3060). compare
Psest_3301 -0.6 -1.5 Predicted transcriptional regulator, BolA superfamily compare
Psest_1920 -0.6 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_0260 -0.6 -1.1 Cell division protein compare
Psest_4103 -0.6 -0.7 AraC-type DNA-binding domain-containing proteins compare
Psest_0842 -0.6 -1.5 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_3717 -0.6 -3.0 Tfp pilus assembly protein PilO compare
Psest_3720 -0.6 -4.9 penicillin-binding protein, 1A family compare
Psest_2000 -0.6 -3.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0209 -0.6 -0.9 membrane protein AbrB duplication compare
Psest_2768 -0.6 -0.9 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_1813 -0.6 -4.4 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2714 -0.6 -1.1 7-cyano-7-deazaguanine reductase compare
Psest_1665 -0.6 -1.7 hypothetical protein compare
Psest_4106 -0.6 -1.8 formate dehydrogenase, gamma subunit compare
Psest_2786 -0.6 -0.9 Domain of unknown function (DUF3597). compare
Psest_2957 -0.6 -2.0 competence protein ComEA helix-hairpin-helix repeat region compare
Psest_3476 -0.6 -1.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium Fumarate dibasic in Pseudomonas stutzeri RCH2

For carbon source Sodium Fumarate dibasic across organisms