Experiment set10H14 for Pseudomonas stutzeri RCH2

Compare to:

D-Gluconic Acid sodium salt carbon source

200 most detrimental genes:

  gene name fitness t score description  
Psest_2126 +3.0 12.7 Transcriptional regulators compare
Psest_1840 +1.6 14.6 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_3377 +1.4 2.4 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1729 +1.3 8.3 flagellar motor switch protein FliM compare
Psest_2963 +1.3 7.2 flagellar basal-body rod protein FlgG, Gram-negative bacteria compare
Psest_1737 +1.3 7.7 flagellar biosynthesis protein FlhA compare
Psest_2586 +1.3 11.3 FimV N-terminal domain compare
Psest_2964 +1.2 6.9 flagellar basal-body rod protein FlgF compare
Psest_1735 +1.2 7.2 flagellar biosynthetic protein FlhB compare
Psest_1734 +1.2 5.4 flagellar biosynthetic protein FliR compare
Psest_2260 +1.2 10.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1731 +1.1 3.5 flagellar biosynthetic protein FliO compare
Psest_2960 +1.1 5.9 flagellar rod assembly protein/muramidase FlgJ compare
Psest_3113 +1.1 2.1 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1635 +1.1 9.5 Signal transduction histidine kinase compare
Psest_1723 +1.1 5.5 flagellar export protein FliJ compare
Psest_1719 +1.0 6.4 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_1733 +1.0 2.8 flagellar biosynthetic protein FliQ compare
Psest_2961 +1.0 4.7 Flagellar basal-body P-ring protein compare
Psest_1718 +1.0 4.1 flagellar hook-basal body complex protein FliE compare
Psest_1720 +1.0 7.0 flagellar motor switch protein FliG compare
Psest_1740 +1.0 6.0 RNA polymerase sigma factor, FliA/WhiG family compare
Psest_1819 +1.0 8.7 Nucleoside-diphosphate-sugar epimerases compare
Psest_0845 +1.0 1.5 hypothetical protein compare
Psest_3192 +1.0 5.8 diguanylate cyclase (GGDEF) domain compare
Psest_0298 +1.0 3.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3286 +1.0 4.7 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_4078 +0.9 2.0 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_2066 +0.9 1.7 ABC-type uncharacterized transport system, permease component compare
Psest_1732 +0.9 4.6 flagellar biosynthetic protein FliP compare
Psest_0705 +0.9 6.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0137 +0.9 5.4 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_2965 +0.9 7.6 fagellar hook-basal body proteins compare
Psest_3031 +0.9 0.9 hypothetical protein compare
Psest_0334 +0.9 2.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4113 +0.9 5.3 hypothetical protein compare
Psest_3115 +0.9 4.5 electron transport complex, RnfABCDGE type, D subunit compare
Psest_2072 +0.9 5.0 Methyltransferase domain. compare
Psest_0260 +0.9 1.3 Cell division protein compare
Psest_1722 +0.8 5.5 flagellar protein export ATPase FliI compare
Psest_0956 +0.8 5.6 Transcriptional regulators compare
Psest_1721 +0.8 3.3 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_2971 +0.8 4.7 flagella basal body P-ring formation protein FlgA compare
Psest_2962 +0.8 5.7 Flagellar basal body L-ring protein compare
Psest_0139 +0.8 2.8 ABC-type histidine transport system, ATPase component compare
Psest_2581 +0.8 2.1 Uncharacterized protein conserved in bacteria compare
Psest_0393 +0.8 5.1 Methylase of chemotaxis methyl-accepting proteins compare
Psest_4345 +0.8 5.3 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_1679 +0.8 1.8 ribonuclease, Rne/Rng family compare
Psest_3456 +0.8 1.6 RNA polymerase sigma factor, sigma-70 family compare
Psest_3828 +0.8 1.4 zinc-binding alcohol dehydrogenase family protein compare
Psest_2308 +0.8 0.9 Predicted Fe-S protein compare
Psest_3718 +0.8 3.5 Tfp pilus assembly protein PilN compare
Psest_3838 +0.8 2.8 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_1600 +0.7 2.6 hypothetical protein compare
Psest_1122 +0.7 6.2 putative adhesin (DUF1302) (from data) compare
Psest_0136 +0.7 5.4 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_0409 +0.7 3.2 Putative homoserine kinase type II (protein kinase fold) compare
Psest_0302 +0.7 6.3 Chemotaxis protein histidine kinase and related kinases compare
Psest_1924 +0.7 6.4 adhesin-associated MmpL efflux pump (from data) compare
Psest_1728 +0.7 3.4 Flagellar basal body-associated protein compare
Psest_3843 +0.7 4.7 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_4209 +0.7 1.9 Uncharacterized conserved small protein compare
Psest_2959 +0.7 5.6 flagellar hook-associated protein FlgK compare
Psest_3535 +0.7 2.3 hypothetical protein compare
Psest_2645 +0.7 3.5 Transcriptional regulator compare
Psest_0958 +0.7 4.1 Oligoketide cyclase/lipid transport protein compare
Psest_1810 +0.7 5.6 UDP-N-acetylglucosamine 4,6-dehydratase compare
Psest_0193 +0.7 0.5 conserved hypothetical protein compare
Psest_2958 +0.7 5.5 flagellar hook-associated protein 3 compare
Psest_1161 +0.7 1.7 E3 Ubiquitin ligase. compare
Psest_2775 +0.7 1.9 Glycerol-3-phosphate dehydrogenase compare
Psest_4196 +0.7 2.4 Type II secretory pathway, component PulK compare
Psest_4049 +0.7 1.7 hypothetical protein compare
Psest_3301 +0.7 2.2 Predicted transcriptional regulator, BolA superfamily compare
Psest_0138 +0.7 4.2 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3536 +0.7 0.6 hypothetical protein compare
Psest_1260 +0.6 3.5 type IV pilus biogenesis/stability protein PilW compare
Psest_2953 +0.6 1.6 Histone acetyltransferase compare
Psest_2343 +0.6 1.8 Mg-dependent DNase compare
Psest_3937 +0.6 1.4 ATP-dependent protease HslVU, ATPase subunit compare
Psest_1812 +0.6 4.6 pseudaminic acid CMP-transferase compare
Psest_3270 +0.6 1.3 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_3478 +0.6 1.6 Cytochrome B561 compare
Psest_2752 +0.6 1.5 Uncharacterized protein conserved in bacteria compare
Psest_3063 +0.6 2.4 hypothetical protein compare
Psest_0496 +0.6 3.2 flagellar motor stator protein MotA compare
Psest_3719 +0.6 4.8 type IV pilus assembly protein PilM compare
Psest_1457 +0.6 1.0 FOG: Ankyrin repeat compare
Psest_1816 +0.6 3.0 hypothetical protein compare
Psest_3415 +0.6 5.2 hypothetical protein compare
Psest_0707 +0.6 3.2 MYND finger. compare
Psest_1173 +0.6 2.7 hypothetical protein compare
Psest_3716 +0.6 3.9 Tfp pilus assembly protein PilP compare
Psest_0300 +0.6 4.0 Methyl-accepting chemotaxis protein compare
Psest_0276 +0.6 2.6 putative oxygen-independent coproporphyrinogen III oxidase compare
Psest_1815 +0.6 4.6 pseudaminic acid synthase compare
Psest_4325 +0.6 1.2 hypothetical protein compare
Psest_2899 +0.6 1.3 hypothetical protein compare
Psest_1741 +0.6 1.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1516 +0.6 1.9 Uncharacterized lipoprotein compare
Psest_2950 +0.6 1.7 putative NAD(P)H quinone oxidoreductase, PIG3 family compare
Psest_3014 +0.6 1.3 cob(I)alamin adenosyltransferase compare
Psest_2268 +0.6 1.7 Alcohol dehydrogenase, class IV compare
Psest_1743 +0.6 2.8 Chemotaxis protein histidine kinase and related kinases compare
Psest_1923 +0.6 2.7 adhesin-associated BNR repeat protein (from data) compare
Psest_1103 +0.6 1.9 GTP-binding protein YchF compare
Psest_1738 +0.6 2.2 flagellar biosynthetic protein FlhF compare
Psest_1809 +0.6 3.9 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1920 +0.6 0.8 Uncharacterized protein conserved in bacteria compare
Psest_2605 +0.6 1.6 transcriptional activator RfaH compare
Psest_1123 +0.6 4.5 adhesin-associated sorting protein (DUF1329) (from data) compare
Psest_3222 +0.6 1.4 Putative threonine efflux protein compare
Psest_3670 +0.5 3.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_3842 +0.5 1.9 Transcriptional regulators compare
Psest_1179 +0.5 1.4 2-hydroxy-3-oxopropionate reductase compare
Psest_3416 +0.5 3.6 Predicted ATPase (AAA+ superfamily) compare
Psest_1491 +0.5 2.1 Cold shock proteins compare
Psest_0872 +0.5 0.7 Helix-turn-helix. compare
Psest_2766 +0.5 0.9 hypothetical protein compare
Psest_1242 +0.5 1.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3717 +0.5 2.5 Tfp pilus assembly protein PilO compare
Psest_0706 +0.5 3.6 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_3351 +0.5 2.5 peptide chain release factor 3 compare
Psest_2370 +0.5 2.0 Protein of unknown function (DUF1652). compare
Psest_3289 +0.5 3.2 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1699 +0.5 1.3 Selenocysteine lyase compare
Psest_3777 +0.5 2.4 diguanylate cyclase (GGDEF) domain compare
Psest_1366 +0.5 1.2 hypothetical protein compare
Psest_1818 +0.5 4.2 GDP-mannose 4,6-dehydratase compare
Psest_3227 +0.5 2.6 Predicted ester cyclase compare
Psest_3687 +0.5 3.2 hypothetical protein compare
Psest_0355 +0.5 1.1 Glycine cleavage system regulatory protein compare
Psest_3518 +0.5 1.1 Transcriptional regulators compare
Psest_0497 +0.5 2.8 Flagellar motor protein compare
Psest_0737 +0.5 0.7 Cu(I)-responsive transcriptional regulator compare
Psest_3715 +0.5 4.1 type IV pilus secretin (or competence protein) PilQ compare
Psest_3064 +0.5 1.1 hypothetical protein compare
Psest_2681 +0.5 1.8 Uncharacterized protein conserved in bacteria compare
Psest_3700 +0.5 1.0 hypothetical protein compare
Psest_1824 +0.5 1.4 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_0367 +0.5 1.8 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_0301 +0.5 2.4 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0073 +0.5 1.9 ABC-type multidrug transport system, ATPase and permease components compare
Psest_0108 +0.5 2.6 malonate decarboxylase, epsilon subunit compare
Psest_0444 +0.5 2.3 methionine-S-sulfoxide reductase compare
Psest_4108 +0.5 1.8 seryl-tRNA(sec) selenium transferase compare
Psest_2604 +0.5 2.9 WbqC-like protein family. compare
Psest_2136 +0.5 3.4 Predicted homoserine dehydrogenase compare
Psest_1078 +0.5 2.1 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) compare
Psest_4265 +0.5 3.1 dTDP-4-dehydrorhamnose reductase compare
Psest_1849 +0.5 1.6 Predicted glutamine amidotransferase compare
Psest_0609 +0.5 1.0 hypothetical protein compare
Psest_3925 +0.5 2.3 Methyl-accepting chemotaxis protein compare
Psest_2723 +0.5 2.0 Uncharacterized conserved protein compare
Psest_3005 +0.5 1.5 Fructose-2,6-bisphosphatase compare
Psest_3929 +0.4 1.9 hypothetical protein compare
Psest_1076 +0.4 1.8 acetyl-CoA acetyltransferases compare
Psest_3413 +0.4 1.2 hypothetical protein compare
Psest_4054 +0.4 1.3 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
Psest_2603 +0.4 3.6 capsular exopolysaccharide family compare
Psest_1567 +0.4 1.8 Transcriptional regulator compare
Psest_4273 +0.4 2.6 Lysophospholipase compare
Psest_2383 +0.4 2.5 Predicted transcriptional regulators compare
Psest_2023 +0.4 1.1 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_0344 +0.4 2.0 Superfamily II DNA and RNA helicases compare
Psest_1397 +0.4 0.9 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_3339 +0.4 2.0 Signal transduction histidine kinase compare
Psest_2538 +0.4 1.0 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2670 +0.4 2.0 Uncharacterized conserved protein compare
Psest_2973 +0.4 2.3 Flagellar biosynthesis/type III secretory pathway chaperone compare
Psest_2120 +0.4 0.9 Transcriptional regulator compare
Psest_1871 +0.4 2.5 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_3336 +0.4 1.8 Membrane proteins related to metalloendopeptidases compare
Psest_2967 +0.4 0.9 flagellar basal-body rod protein FlgC compare
Psest_2384 +0.4 1.4 Uncharacterized protein conserved in bacteria compare
Psest_3488 +0.4 1.3 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1293 +0.4 0.9 VanZ like family. compare
Psest_3922 +0.4 1.2 Response regulator of citrate/malate metabolism compare
Psest_2966 +0.4 2.2 Flagellar hook capping protein compare
Psest_1837 +0.4 2.4 Endoglucanase compare
Psest_2939 +0.4 1.8 Predicted membrane protein compare
Psest_3816 +0.4 0.8 DNA-directed RNA polymerase, omega subunit compare
Psest_4221 +0.4 1.0 homoserine kinase, Neisseria type compare
Psest_2764 +0.4 0.5 hypothetical protein compare
Psest_4241 +0.4 1.7 hypothetical protein compare
Psest_2600 +0.4 2.6 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis compare
Psest_0083 +0.4 0.8 Uncharacterized conserved protein compare
Psest_0575 +0.4 0.5 HrpA-like helicases compare
Psest_4109 +0.4 1.9 selenocysteine-specific elongation factor SelB compare
Psest_2238 +0.4 1.4 hypothetical protein compare
Psest_1860 +0.4 0.9 Uncharacterized conserved protein compare
Psest_1749 +0.4 2.2 Chemotaxis signal transduction protein compare
Psest_2587 +0.4 1.4 Aspartate-semialdehyde dehydrogenase compare
Psest_1120 +0.4 1.4 uracil phosphoribosyltransferase compare
Psest_4076 +0.4 2.6 hypothetical protein compare
Psest_2018 +0.4 1.0 Uncharacterized conserved protein compare
Psest_0133 +0.4 0.6 type VI secretion protein, VC_A0107 family compare
Psest_2025 +0.4 0.6 cold shock domain protein CspD compare
Psest_4184 +0.4 1.4 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Gluconic Acid sodium salt in Pseudomonas stutzeri RCH2

For carbon source D-Gluconic Acid sodium salt across organisms