Protein Info for Xcc-8004.971.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: GTP-binding protein EngB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 188 TIGR03598: ribosome biogenesis GTP-binding protein YsxC" amino acids 1 to 172 (172 residues), 216.7 bits, see alignment E=1e-68 PF01926: MMR_HSR1" amino acids 8 to 119 (112 residues), 64.1 bits, see alignment E=6.5e-22

Best Hits

Swiss-Prot: 100% identical to ENGB_XANCP: Probable GTP-binding protein EngB (engB) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)

KEGG orthology group: K03978, GTP-binding protein (inferred from 100% identity to xcb:XC_0767)

Predicted SEED Role

"GTP-binding protein EngB" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4UYM8 at UniProt or InterPro

Protein Sequence (188 amino acids)

>Xcc-8004.971.1 GTP-binding protein EngB (Xanthomonas campestris pv. campestris strain 8004)
LPDDGGYEVAFAGRSNAGKSSALNALTRQNSLARVSKTPGRTQQLVFFQIQPERYLVDLP
GYGYAKVPQDLQAHWQAFIDRYFRTREALRGLVVVMDIRHPLKDYDLQMLGYAAERGLPA
HGLLTKADKLGRGQQMQTLQKVKKEVSSRFGDSVTVQTYSGESRQGVDELRGIVGGWLGL
DVEPPADA