Protein Info for Xcc-8004.942.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 690 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF21305: type_II_gspD_N0" amino acids 35 to 104 (70 residues), 68.9 bits, see alignment E=4.2e-23 TIGR02517: type II secretion system protein D" amino acids 36 to 632 (597 residues), 564.7 bits, see alignment E=1.2e-173 PF03958: Secretin_N" amino acids 126 to 186 (61 residues), 48.8 bits, see alignment 9.9e-17 amino acids 190 to 253 (64 residues), 43.3 bits, see alignment E=5.3e-15 amino acids 259 to 357 (99 residues), 57.6 bits, see alignment E=1.8e-19 PF00263: Secretin" amino acids 459 to 623 (165 residues), 167.6 bits, see alignment E=2.9e-53

Best Hits

KEGG orthology group: K02453, general secretion pathway protein D (inferred from 100% identity to xcb:XC_0739)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X5T7 at UniProt or InterPro

Protein Sequence (690 amino acids)

>Xcc-8004.942.1 hypothetical protein (Xanthomonas campestris pv. campestris strain 8004)
MIVVRRPWLLSATLLLALPSLTMLPLHAADAPAVRMQDVDLRAFIQDVSRATGITFIVDT
RVQGSVNVARAQAMSEADLLGMLLAVLRANGLIAVSSGPSTYRIIPDDTAAQQPGSAASG
NLGFATQVFTLQRVDARSAAEILKPLVGRGGVIMAMPQGNSLLIADYADNLRRIRGLVAQ
IDTDRAAIDTVTLRNSSAQELARTLTTLFGQAGERSAVLSVLPVESSNSLIVRGDPALVQ
RVVRTALDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAEPGQETRPTAVD
VAASAGAAQAQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDVHREQVLV
EAIVVEISDTAAKRLGVQLLLAGRNGTVPLLATQYSGAAPGIVPLAAAAAGTRSNNGEDD
SVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTPSIMTLDNE
QARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITLAIKQEVSA
IAGPVSTQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLGDVPGLGAL
FRHKSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYNYLRDRQLADGDPEAALDALVRDY
LRAQPPQLPASAPTAPAPQAPAPTAAPRTR