Protein Info for Xcc-8004.915.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: membrane protein, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 247 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 36 to 55 (20 residues), see Phobius details amino acids 75 to 94 (20 residues), see Phobius details amino acids 102 to 121 (20 residues), see Phobius details amino acids 137 to 159 (23 residues), see Phobius details amino acids 166 to 188 (23 residues), see Phobius details amino acids 194 to 214 (21 residues), see Phobius details amino acids 226 to 246 (21 residues), see Phobius details PF01925: TauE" amino acids 12 to 240 (229 residues), 99.8 bits, see alignment E=1e-32

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 100% identity to xca:xccb100_0747)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X4D9 at UniProt or InterPro

Protein Sequence (247 amino acids)

>Xcc-8004.915.1 membrane protein, putative (Xanthomonas campestris pv. campestris strain 8004)
MNDDALHWVLIAGVFLLAGGVKGVAGMGLPTVSMGLLGLWLPPSQAAALLVLPSLVTNLQ
QAWGPAPGALLRRLWPLLALMSVGTWLTAGLIIGGDPRTLRAALGVLLVAYALLGLARWQ
WTLPPHHERWASPLTGLISGLLNGATGVVVVPIAPYFAALGLPRELLIRALATCFGTATL
ALAIALVWQGGVQLSAGVPSLLALLPTALGMWAGTRVRRRISAEMFRRVFFGTLLLLGLQ
ACWQALA