Protein Info for Xcc-8004.852.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: ATP-dependent hsl protease ATP-binding subunit HslU

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 TIGR00390: ATP-dependent protease HslVU, ATPase subunit" amino acids 9 to 455 (447 residues), 677.4 bits, see alignment E=4.7e-208 PF07728: AAA_5" amino acids 57 to 93 (37 residues), 25 bits, see alignment 5e-09 PF00004: AAA" amino acids 58 to 118 (61 residues), 30.5 bits, see alignment E=1.3e-10 amino acids 217 to 344 (128 residues), 32.9 bits, see alignment E=2.5e-11 PF07724: AAA_2" amino acids 196 to 341 (146 residues), 97.4 bits, see alignment E=3e-31

Best Hits

Swiss-Prot: 100% identical to HSLU_XANC8: ATP-dependent protease ATPase subunit HslU (hslU) from Xanthomonas campestris pv. campestris (strain 8004)

KEGG orthology group: K03667, ATP-dependent HslUV protease ATP-binding subunit HslU (inferred from 100% identity to xca:xccb100_0703)

Predicted SEED Role

"ATP-dependent hsl protease ATP-binding subunit HslU" in subsystem Proteasome bacterial or Proteolysis in bacteria, ATP-dependent

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4UYX6 at UniProt or InterPro

Protein Sequence (455 amino acids)

>Xcc-8004.852.1 ATP-dependent hsl protease ATP-binding subunit HslU (Xanthomonas campestris pv. campestris strain 8004)
MPNIDTATMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILM
IGPTGVGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQA
KVRVRNQAEERAEDRILDALLPRRSAGIGFDPEAARHEPSAQDNETRIKFRRMLRNGELD
EREIELEVAVNASMDIMTPPGMEEMGQQLRQMFSNLGGGKSQKRKLTIKAARPLLIEEEA
GKLVNEDDIRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGS
NVSTKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPK
AALIKQYEALLQTEGVALTFGADAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSY
EAPDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL