Protein Info for Xcc-8004.842.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Protease II (EC 3.4.21.83)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 704 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF02897: Peptidase_S9_N" amino acids 28 to 428 (401 residues), 388.2 bits, see alignment E=6.4e-120 PF00326: Peptidase_S9" amino acids 488 to 702 (215 residues), 226.3 bits, see alignment E=4.6e-71

Best Hits

Swiss-Prot: 70% identical to DAPB1_PSEMX: Dipeptidyl aminopeptidase BI (dapb1) from Pseudoxanthomonas mexicana

KEGG orthology group: K01354, oligopeptidase B [EC: 3.4.21.83] (inferred from 100% identity to xca:xccb100_0694)

Predicted SEED Role

"Protease II (EC 3.4.21.83)" (EC 3.4.21.83)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.4.21.83

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X3K6 at UniProt or InterPro

Protein Sequence (704 amino acids)

>Xcc-8004.842.1 Protease II (EC 3.4.21.83) (Xanthomonas campestris pv. campestris strain 8004)
MKPVLTLLIASLMTSSVPSALAALPTPPDVAKHPHVVKAPFGATRNDDYYWLRDDKRENK
AMLAYLNAENTYADALMAPLKPLEDTLYTEIVGRIKQDDASVPYRERGYWYYTRYEAGKD
YPIQARRKGSMDAPEEILLNVNTLAEGKGYFSVGDAEVSQDNRILAWADDAVGRQQYTIR
FKNLETGEVYPDTVEGVSANVVWADDNKTLFYVENDPETLLTVRVKKHVLGTPAKDDVLV
YEEKDDSFYMGISRTRDDKYIVIGVESTVSSETRYAPADKPETFTVLAKRERDVEYHPEH
FGGRWVIRTNADGAKNFKLVTAPTNATTRKQWTDWVAHDPNVYIESYALFDGFTAIEERS
GGLERVRLLKRDGSHEYVKTDESAYSMGLSVNSEPDTAWLRYTYTSLTTPATTYELNTQT
GERKLLMQQPVIGYDAGNYVTERVWVTARDGVKLPVSLVYKKGFKKDGTAALFQYAYGSY
GMSMDPAFNLPAVSLLDRGVVYAIAHIRGGQEMGRQWYDDGKLLHKQNTFNDFVDITRGL
VAQGYAAKDRVAASGGSAGGLLMGAVANMAPQDYRVMVAQVPFVDVVTTMLDASIPLTTN
EYDEWGNPETKDYYDYMLSYSPYDNVRKQAYPAMFVGTGLWDSQVQYWEPAKWVAKLRDD
NTGTYPIVFRTNMEAGHGGKSGRFRRYRELAESYAFVLDQLGVK