Protein Info for Xcc-8004.825.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: sulfur deprivation response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 612 signal peptide" amino acids 5 to 5 (1 residues), see Phobius details transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 28 to 49 (22 residues), see Phobius details amino acids 57 to 75 (19 residues), see Phobius details amino acids 95 to 121 (27 residues), see Phobius details amino acids 140 to 163 (24 residues), see Phobius details amino acids 175 to 195 (21 residues), see Phobius details amino acids 411 to 427 (17 residues), see Phobius details amino acids 433 to 451 (19 residues), see Phobius details amino acids 462 to 479 (18 residues), see Phobius details amino acids 492 to 512 (21 residues), see Phobius details amino acids 519 to 536 (18 residues), see Phobius details amino acids 541 to 561 (21 residues), see Phobius details amino acids 579 to 601 (23 residues), see Phobius details PF03600: CitMHS" amino acids 16 to 537 (522 residues), 242.7 bits, see alignment E=9.1e-76 amino acids 475 to 599 (125 residues), 51.1 bits, see alignment E=1.8e-17 PF02080: TrkA_C" amino acids 221 to 288 (68 residues), 37.1 bits, see alignment E=3.4e-13 PF00939: Na_sulph_symp" amino acids 461 to 597 (137 residues), 34.5 bits, see alignment E=1.8e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcc:XCC3516)

Predicted SEED Role

"sulfur deprivation response regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X433 at UniProt or InterPro

Protein Sequence (612 amino acids)

>Xcc-8004.825.1 sulfur deprivation response regulator (Xanthomonas campestris pv. campestris strain 8004)
MEQQQLVFLVILVVALVLFISEKLRVDLVAMLATLALTLTGILTPTQALSGFSSEPAIIV
AAVFVLSAGLSATGITDRIGAAIGRAAGGREWRAIAVTMPATAALAAFSHHLMITAMMLP
VMMRLAREQKLAASRLLMPMSLAASLGTTLTLISAPAFLLANAALERGGHGRLDLFAITP
IGAVLVGVGMLYMLAGRWLLPKRQGEDDGGADYLRLERYYTELLVDADAPWVGRPLAEFE
AAFTERLQVVDWLRNGMRRRRSSNEGLLRAGDVLLVRASPDEIASVKDEPGLSLHAVAKY
GEQPREDRTDPQRPHEALGEEQLVQAVVAPHSEFVGRSVSRIDFLHTMGVVVVGLWRKEG
WLHGELSELQLQEGDLLVLWGRQHTFQQLSQHRGFLMLMPFDGRRSRRRRAPLAVAIMLA
AVAAAAAEWLPPHIAFLLGAVAMVLTRCVSIEQAYAEIDVRIYVMIAGVIPLGMAMDQTG
TARWLAEHVLAHAHGLSPLSLLLLMFAAAALLTQVLSDAATTVLLTPVALALAQGLGLPP
IPFVVCTAMGAVASFLTPIGHHGNLLILNPGQYRFADFLRVGVPLTVLIAFASAWMARYL
WLGGPLLPFAWP