Protein Info for Xcc-8004.744.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Predicted regulator PutR for proline utilization, GntR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 239 PF00392: GntR" amino acids 16 to 78 (63 residues), 62.8 bits, see alignment E=1.9e-21 PF07729: FCD" amino acids 89 to 210 (122 residues), 94.2 bits, see alignment E=8.4e-31

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcb:XC_0580)

Predicted SEED Role

"Predicted regulator PutR for proline utilization, GntR family" in subsystem Proline, 4-hydroxyproline uptake and utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X3Q3 at UniProt or InterPro

Protein Sequence (239 amino acids)

>Xcc-8004.744.1 Predicted regulator PutR for proline utilization, GntR family (Xanthomonas campestris pv. campestris strain 8004)
MTLAPDSRTTKKRVPLYEEVAERLRQKIYDYVLPPGEWIDEPALAEELGISRTPLRESLK
LLAAEGLVQLDAGRGSRVTRLSLEDLNQLFPVMAMLEGRCAHDAVKRIDAAGVQRLEELH
AAMEAASAAGDLAEYYRNNYLIHETVQHYAGNPWLIRVTHDLHRILKMHRGRQLLTPGRM
AQSLAEHRELMECVRRGDAEGAERTMHTHLLSQGQALAAYVAAGGMLNVPAPLPRSGGV