Protein Info for Xcc-8004.726.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Putative preQ0 transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 185 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 42 to 61 (20 residues), see Phobius details amino acids 68 to 87 (20 residues), see Phobius details amino acids 92 to 111 (20 residues), see Phobius details amino acids 123 to 146 (24 residues), see Phobius details amino acids 150 to 176 (27 residues), see Phobius details PF02592: Vut_1" amino acids 44 to 86 (43 residues), 33.4 bits, see alignment 2.9e-12 amino acids 87 to 168 (82 residues), 54.5 bits, see alignment E=9.2e-19

Best Hits

KEGG orthology group: K09125, hypothetical protein (inferred from 99% identity to xcc:XCC3601)

Predicted SEED Role

"Putative preQ0 transporter" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X3W7 at UniProt or InterPro

Protein Sequence (185 amino acids)

>Xcc-8004.726.1 Putative preQ0 transporter (Xanthomonas campestris pv. campestris strain 8004)
MPAAPAPTFAPLTVRALLWAVSAMGAVVLLSNILVQYPINDWLTWGAFSYPLAFLVSNLI
NRRFGPRAARTVAWCGFALAVVLSIWLATPRIAIASCSAFIAAQLLDISVFDRLRNGNWW
RAPIVATTCSATLDTAIFWSIAFAGAGLPWISWAAGDLAVKLGMGVFLLGPFRALLWRSA
PRASG