Protein Info for Xcc-8004.587.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Na(+) H(+) antiporter subunit D

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 519 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 34 to 54 (21 residues), see Phobius details amino acids 59 to 64 (6 residues), see Phobius details amino acids 80 to 102 (23 residues), see Phobius details amino acids 110 to 127 (18 residues), see Phobius details amino acids 131 to 150 (20 residues), see Phobius details amino acids 162 to 186 (25 residues), see Phobius details amino acids 210 to 232 (23 residues), see Phobius details amino acids 243 to 267 (25 residues), see Phobius details amino acids 280 to 299 (20 residues), see Phobius details amino acids 305 to 323 (19 residues), see Phobius details amino acids 335 to 353 (19 residues), see Phobius details amino acids 374 to 394 (21 residues), see Phobius details amino acids 410 to 430 (21 residues), see Phobius details amino acids 468 to 489 (22 residues), see Phobius details PF00361: Proton_antipo_M" amino acids 129 to 408 (280 residues), 105 bits, see alignment E=2.3e-34

Best Hits

KEGG orthology group: K05561, multicomponent K+:H+ antiporter subunit D (inferred from 100% identity to xcc:XCC0444)

Predicted SEED Role

"Na(+) H(+) antiporter subunit D" in subsystem Sodium Hydrogen Antiporter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X338 at UniProt or InterPro

Protein Sequence (519 amino acids)

>Xcc-8004.587.1 Na(+) H(+) antiporter subunit D (Xanthomonas campestris pv. campestris strain 8004)
MNHLLILPILIPMLGASASLFVEHRRYGPRVQRAVAWTSMALLAVAVVALFARAAHGEVL
VYLLGDWPARLGIVLMGDRLAAWMLMTTLVLGAACLLHACAGWDRRAPHFHALFQFQLMG
LNGAFLTGDIFNLFVFFEVMLIASYGLLLSGGRGLQMRIGLHYVVFNVCASTLFLIALGL
LFGLFGTLNMAELSQRIATLPAADVPLAKATLGLLLLVFCSKAALLPLYLWLPETYSRAP
ASVAALFAIMTKVGLYAVLRVSSLWFGAGAGALHGFGRHALLWLGIGTLVMAAFGVMAAS
RLRVMVSYLVVFSAATLFIAFSLDDARALGAGLYYLPHSCFVAAALFMVSDLIRRRRGRA
SDRKEVVAPLPGRAIPGAMFMIAAVAVAGLPPLSGFLAKAALLQHVPADLVAPVWGAVLG
SSLLVVIGLTRAGVRLFWRVPEAVEEAVEDDAPERLPQRRARMRPVETAATIILLSGLVA
MTIGAGPLMHYTDAAGAQLRDPGAYLEQVRGTTPQRRQP