Protein Info for Xcc-8004.4969.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: RarD protein, chloamphenicol sensitive

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 45 to 63 (19 residues), see Phobius details amino acids 75 to 95 (21 residues), see Phobius details amino acids 107 to 124 (18 residues), see Phobius details amino acids 131 to 148 (18 residues), see Phobius details amino acids 154 to 170 (17 residues), see Phobius details amino acids 180 to 199 (20 residues), see Phobius details amino acids 219 to 237 (19 residues), see Phobius details amino acids 245 to 265 (21 residues), see Phobius details amino acids 272 to 293 (22 residues), see Phobius details TIGR00688: protein RarD" amino acids 11 to 264 (254 residues), 199 bits, see alignment E=4.7e-63 PF00892: EamA" amino acids 12 to 147 (136 residues), 43.7 bits, see alignment E=1.6e-15 amino acids 156 to 288 (133 residues), 32.3 bits, see alignment E=5.2e-12

Best Hits

Swiss-Prot: 43% identical to RARD_STREX: Protein RarD (rarD) from Streptomyces exfoliatus

KEGG orthology group: K05786, chloramphenicol-sensitive protein RarD (inferred from 100% identity to xca:xccb100_4104)

Predicted SEED Role

"RarD protein, chloamphenicol sensitive"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XBU2 at UniProt or InterPro

Protein Sequence (302 amino acids)

>Xcc-8004.4969.1 RarD protein, chloamphenicol sensitive (Xanthomonas campestris pv. campestris strain 8004)
MSAVSPVEARRGLLITASTFVLWGVIPLYWHVLKAVPSLQIIGHRIVWSALLVVAWLVAT
SGLRWWRTIAAQPRALAMLAGSSVAIAFNWGLYIWAINAGHVIESSLGYFINPLLSVLLG
VVVLKERLRRLQWVAVACAALGVLWLTLDAGAPPWIALGLASSFGLYGLLRKLVAVDPVA
GLGVESVYLFVPALLLVGWGEYGHGGGFIGSWSLGTDAMLIFGGVVTALPLIGFAYGVRR
IPLSLVGILQYIAPSLQLLLGVWFFHEPFDPGRAIGFAAIWLGLLLFVGDSVWRARRPAA
SR