Protein Info for Xcc-8004.4922.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 PF00970: FAD_binding_6" amino acids 39 to 128 (90 residues), 41.4 bits, see alignment E=2.3e-14 PF00175: NAD_binding_1" amino acids 141 to 241 (101 residues), 45.8 bits, see alignment E=1.3e-15 PF00111: Fer2" amino acids 273 to 341 (69 residues), 30.1 bits, see alignment E=5.8e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcc:XCC3879)

Predicted SEED Role

"Flavodoxin reductases (ferredoxin-NADPH reductases) family 1" in subsystem Anaerobic respiratory reductases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XC38 at UniProt or InterPro

Protein Sequence (351 amino acids)

>Xcc-8004.4922.1 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 (Xanthomonas campestris pv. campestris strain 8004)
MPKSPLPTRLARRLVSPQLFDFWATRINPLWTLERPMARLVARTPASRDAVTLLFQPNGH
WQGLQAGQHVSIGVEIDGRRLLRSYSPTVLADGRLAITVKAITGGLVSTYLAGEAPLGAV
VSLDPAFGDMLLPTTPAPLLLLAAGSGITPMRALLQAAAAAGMPMDVDLLYWVRQRDEAC
FLDEFEALAAAHPRLRAQLLTTREGAAPAPRIDSFPLEQVTALQDRHVMACGPGGFVQAA
RARLQDRVARFQAEAFSVPVLDDGEAGQVQVQLSRSGRTLTLSRGQSLLEGLEAQGLRPK
HGCRMGICNSCACARQSGTTRHLLTGERSSEPTAQVRLCISAASTDLILDL