Protein Info for Xcc-8004.4463.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 transmembrane" amino acids 157 to 175 (19 residues), see Phobius details amino acids 182 to 199 (18 residues), see Phobius details amino acids 211 to 229 (19 residues), see Phobius details amino acids 235 to 255 (21 residues), see Phobius details amino acids 269 to 293 (25 residues), see Phobius details amino acids 307 to 325 (19 residues), see Phobius details amino acids 332 to 350 (19 residues), see Phobius details amino acids 356 to 374 (19 residues), see Phobius details amino acids 385 to 405 (21 residues), see Phobius details amino acids 416 to 439 (24 residues), see Phobius details PF06738: ThrE" amino acids 47 to 289 (243 residues), 177.6 bits, see alignment E=2.9e-56 PF12821: ThrE_2" amino acids 315 to 436 (122 residues), 47.1 bits, see alignment E=2.8e-16

Best Hits

KEGG orthology group: None (inferred from 99% identity to xca:xccb100_3718)

Predicted SEED Role

"Integral membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XCR7 at UniProt or InterPro

Protein Sequence (445 amino acids)

>Xcc-8004.4463.1 Integral membrane protein (Xanthomonas campestris pv. campestris strain 8004)
MATTGQACCAYTGVLAQAPLRSDPPRMSAATVVPSSAGATYAQRVAFVSEIAGRLHSYGT
TAQRLEAAVIGLSQKLGLDCEPWSNPTGIILSFSDPTKSIGSSDITRVIRLAPGENDLYK
LSVADYVADSVASGRMSIAQGHTALRRLDRETDRRGKALQVLAFGLAAAGVAGLWKLPWL
DIATAGVIGMSIGLLTQYTDKRPATKEAGEALAGLLAGVVAALVASLVGPLNLNTVIIAS
LVVLLPGMSLTNAFNELASQHWVSGTARLAGAVTTVLKLTVGAVIAVTLTQLVGLNPQVA
AVRPQAGWVEWASLLVAAYAFAVLFKANRRDYLWIMAAAMSGYVIARYAGHAWGGPAGVF
ASAMALTAAGNLFGRVVQKPGALIRLPGIIMLVPGSTSLRGFLTLVQQQDVTVGQAALLA
VTNIVMALVAGLLFGNLLIPARKNL