Protein Info for Xcc-8004.4256.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Transcriptional regulator for ferulate or vanillate catabolism

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 284 PF00392: GntR" amino acids 71 to 130 (60 residues), 53.2 bits, see alignment E=1.9e-18 PF07729: FCD" amino acids 141 to 275 (135 residues), 51.3 bits, see alignment E=1.6e-17

Best Hits

KEGG orthology group: K11475, GntR family transcriptional regulator, vanillate catabolism transcriptional regulator (inferred from 99% identity to xca:xccb100_3548)

Predicted SEED Role

"Transcriptional regulator for ferulate or vanillate catabolism" in subsystem Phenylpropanoid compound degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (284 amino acids)

>Xcc-8004.4256.1 Transcriptional regulator for ferulate or vanillate catabolism (Xanthomonas campestris pv. campestris strain 8004)
MWVGSMALGIPNSINRDGFAPKRYPWDPNCHQATSSARFLCGLHRVLPLGRAGSTVRRER
MEPMANNHRLQAVQQLRELILCGTFAPGERITEAALAERLAISRTPIRQALPALCQEGLL
VQAGNRGYAVRRFSQQESLDALAVRALMEGMAARAVAEQGASATLLAALHGCLDEGDRIL
AKRTLDASDELAYGDMNARFHRMIVMAADKPILTETVDRCTLVPFVSPTNVVFGQRSPTL
AYDDLFYGHRQHGAIVTAIEQRDGARAELLFREHANTQRHSMGM