Protein Info for Xcc-8004.4253.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Transcriptional regulator, LysR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 333 transmembrane" amino acids 102 to 125 (24 residues), see Phobius details PF00126: HTH_1" amino acids 15 to 73 (59 residues), 60.7 bits, see alignment E=1.1e-20 PF03466: LysR_substrate" amino acids 102 to 307 (206 residues), 114.6 bits, see alignment E=4.4e-37

Best Hits

KEGG orthology group: K02623, LysR family transcriptional regulator, pca operon transcriptional activator (inferred from 100% identity to xcc:XCC0806)

Predicted SEED Role

"Transcriptional regulator, LysR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XAR2 at UniProt or InterPro

Protein Sequence (333 amino acids)

>Xcc-8004.4253.1 Transcriptional regulator, LysR family (Xanthomonas campestris pv. campestris strain 8004)
MTMSSVFFEHRIKVRHLRVIEALDRQKSLLRASRVLNVTQPALTRALQEIEEIVGAPLFE
RHSRGVRPNAMGEVLVQTAHVVLGQLRRAQDTFEGLLQDDALTITVGALPVAASGLLPAV
LAALYRAEPTLRVRLLHGRTDELLPKLAGNEIDLVVGRLYPLARYDALVRKVLYQDPIAL
VARSDHPLFADGQVRIAEAAAYRQVLPTLSQHVERDVAQVMREHGLATRDQLRSSSASFT
REILLGTDCIAVMPSMMVSGDIARGELRAFQLQQPSQARAGGVIYRDSGAILKPGVRLLM
RELERQLKTMAEQGAVWVDDQAGEYDVLMDASA