Protein Info for Xcc-8004.4187.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 transmembrane" amino acids 36 to 62 (27 residues), see Phobius details amino acids 102 to 121 (20 residues), see Phobius details amino acids 142 to 167 (26 residues), see Phobius details amino acids 182 to 203 (22 residues), see Phobius details amino acids 214 to 235 (22 residues), see Phobius details amino acids 249 to 272 (24 residues), see Phobius details TIGR00765: YihY family inner membrane protein" amino acids 19 to 278 (260 residues), 242.5 bits, see alignment E=3.2e-76 PF03631: Virul_fac_BrkB" amino acids 30 to 276 (247 residues), 210.2 bits, see alignment E=2.1e-66

Best Hits

Swiss-Prot: 100% identical to Y3370_XANC8: UPF0761 membrane protein XC_3370 (XC_3370) from Xanthomonas campestris pv. campestris (strain 8004)

KEGG orthology group: K07058, membrane protein (inferred from 100% identity to xca:xccb100_3490)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4URA9 at UniProt or InterPro

Protein Sequence (422 amino acids)

>Xcc-8004.4187.1 hypothetical protein (Xanthomonas campestris pv. campestris strain 8004)
VNTMHQWKERLRDRARTASFGRFLWRRFLDDRLFQAAASLAYTTVFALVPLAIVVFGVLS
AFPAFNEWKDALTDFIFNNFVPGAARSVQNYLNRSLEDLGKFTVAGMVALVASLLITLHS
IEQTFNSIWRVAAARPKVTRFLIYWTVLTLGTMLAAASMAMAAYVFALPLFRTTEGQWLA
EFAWRLAPMAVEFVCIVLIYRVVPQHAVRLRHALPGALLAVILMEIVKWGFGFYLGNFQT
YQRIYGALSALPILLLWIYLSWVSVLLGASLASSMSAFRYQPEAMRLPPGFEIYGLLRLL
GRFRQARLHGNGLDEDRILALEPMLTDTLMQELLCELKRIRLLRRDERGNWLLARDLDVV
PLAELYESCQLRVPVEDRPLPCRDDPYGQAAAAALEQLRQPLRSVLAQPVGDLYTHLPGD
PP