Protein Info for Xcc-8004.4014.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: DNA polymerase III subunits gamma and tau (EC 2.7.7.7)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 653 TIGR02397: DNA polymerase III, subunit gamma and tau" amino acids 3 to 353 (351 residues), 416.8 bits, see alignment E=4.2e-129 PF13177: DNA_pol3_delta2" amino acids 20 to 178 (159 residues), 149.3 bits, see alignment E=3.5e-47 PF00004: AAA" amino acids 42 to 171 (130 residues), 46 bits, see alignment E=2.6e-15 PF12169: DNA_pol3_gamma3" amino acids 234 to 360 (127 residues), 77.5 bits, see alignment E=3.2e-25 PF12170: DNA_pol3_tau_5" amino acids 528 to 648 (121 residues), 49.9 bits, see alignment E=1.3e-16

Best Hits

KEGG orthology group: K02343, DNA polymerase III subunit gamma/tau [EC: 2.7.7.7] (inferred from 100% identity to xcb:XC_3244)

Predicted SEED Role

"DNA polymerase III subunits gamma and tau (EC 2.7.7.7)" in subsystem DNA-replication (EC 2.7.7.7)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XAD7 at UniProt or InterPro

Protein Sequence (653 amino acids)

>Xcc-8004.4014.1 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) (Xanthomonas campestris pv. campestris strain 8004)
MSYLVLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAK
SLNCETGTSADPCGTCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKF
KVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDE
DQIQGQMTRILAAEEIESDPSAIVQLSKAADGSLRDGLSLLDQAIAYAGGALREDVVRTM
LGTVDRTQVGAMLQALSDGDGAQLLKVVAALAEFSPDWSGVLEALAEALHRIQVQQLVPS
VAFVGDGIDPTGFAAQLRPEVVQLWYQMALNGRRDLYLAPSPRAGFEMAVLRMLAFRPAA
AVPAGSGDDGRGASAGGHTRGTATGVQAAPAAAAPARAATSAKAADVSPAPVVSAPPVAA
APSPVVVLPTAAAEPAPSAPPARTDDTPPWAVDDAPVRAQAAPQRATAEVPAAVPLMAPE
AAMALPATVADDAAPAAMDAVVPVAPPSAPAPVTPPAATFDDGHIADAEQWLELVTRSGL
NGPSRQLAANAAFIGHRDGVLRLALAPGFEYLNSERSIANLAQALAPELGNTPRIVIETG
SADVETLHERANRQKGERQSAAETAFMNDPNVQQLIQQQGARVVPDSIRPYDE