Protein Info for Xcc-8004.3834.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Pathogenicity-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 transmembrane" amino acids 109 to 128 (20 residues), see Phobius details PF09413: DUF2007" amino acids 1 to 75 (75 residues), 26.2 bits, see alignment E=3.5e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to xca:xccb100_3195)

Predicted SEED Role

"Pathogenicity-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q04079 at UniProt or InterPro

Protein Sequence (168 amino acids)

>Xcc-8004.3834.1 Pathogenicity-related protein (Xanthomonas campestris pv. campestris strain 8004)
MRKIFSSQRIETAEGVANLLRNAGIEIRISNGRSYQSKRSGQFSYLEQGNAQAHPTVWIV
HANDQPRARELLRDARLLDTTRRDMPNVEYTFREGETGSSTSARSWAWRIRLVLLLVIGA
VAMVVVMRHRAAPEAPAATPAAQPAPAKTPQAPAAEEDQTRVRIQPAS