Protein Info for Xcc-8004.3731.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 640 transmembrane" amino acids 7 to 28 (22 residues), see Phobius details amino acids 35 to 56 (22 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 104 to 127 (24 residues), see Phobius details amino acids 195 to 217 (23 residues), see Phobius details amino acids 236 to 258 (23 residues), see Phobius details amino acids 279 to 296 (18 residues), see Phobius details amino acids 302 to 319 (18 residues), see Phobius details PF00771: FHIPEP" amino acids 22 to 424 (403 residues), 500.9 bits, see alignment E=3.2e-154 amino acids 429 to 630 (202 residues), 152.6 bits, see alignment E=8.3e-49

Best Hits

Swiss-Prot: 94% identical to HRC2_XANEU: Protein hrpC2 (hrpC2) from Xanthomonas euvesicatoria

KEGG orthology group: K03230, type III secretion protein SctV (inferred from 100% identity to xcc:XCC1229)

Predicted SEED Role

"Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)" in subsystem Type III secretion systems, extended

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X9V5 at UniProt or InterPro

Protein Sequence (640 amino acids)

>Xcc-8004.3731.1 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) (Xanthomonas campestris pv. campestris strain 8004)
MRVTRYFAYTGEVAIAALVVAVIGLMILPLPTPLIDTLLGINITLSVVLLMVTMYVPDSI
SLSSFPSLLLFTTLLRLSLNIASTKSILLHAEAGHIIESFGELVVGGNLVVGLVVFLIIT
TVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRGGNLTADEARRKRARLAIESQL
HGGMDGAMKFVKGDAIAGLVITMVNILAGIVVGVTYHGMSAGEAANRFAILSVGDAMVSQ
IASLLISVAAGVMITRVANENETKISSLGLDIGRQLTSNARALMAASVLLACFAFVPGFP
ALLFLLLAAAVGAGGYTIWRKQRDTSGSDQPALPSTSRKGAKGDAPHIRKSAPDFASPLS
MRLSPQLAARLDPALLDQAIESERRQLVELLGLPFPGIAIWQSESLQGLQYEVLIHDVPE
TRSALSDTADMQKALAQQAIAPLHARAHLFVGIQETQWMLEQVGADYPGLVAEVNKAMPA
QRIADVLRRLLEERIPVRNIKSILESLVVWGPKEKDLLMLTEYVRCDLGRYLAHTATAGT
GQLPAVMLDHAVEQLIRQSIRATPAGNFLALPPEQANQLVEQVERIVEDQARHPLAVVAS
MDVRRYVRRMIEARLNWLEVYSFQELGAEVQLQPIGRVVA