Protein Info for Xcc-8004.3690.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Transcriptional regulator, XRE family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 460 PF13560: HTH_31" amino acids 11 to 64 (54 residues), 45.3 bits, see alignment 1.7e-15 PF01381: HTH_3" amino acids 16 to 55 (40 residues), 42.9 bits, see alignment 7.8e-15 PF06114: Peptidase_M78" amino acids 190 to 312 (123 residues), 93.6 bits, see alignment E=1.7e-30 PF09856: ScfRs" amino acids 313 to 454 (142 residues), 206 bits, see alignment E=6e-65

Best Hits

KEGG orthology group: K07110, (no description) (inferred from 100% identity to xcc:XCC1259)

Predicted SEED Role

"Transcriptional regulator, XRE family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X9C1 at UniProt or InterPro

Protein Sequence (460 amino acids)

>Xcc-8004.3690.1 Transcriptional regulator, XRE family protein (Xanthomonas campestris pv. campestris strain 8004)
MPQSSALLRHQLGLRLQRLRQRHGLTQAELARRLGLSPSYLNQIERNQRPLTLAIQQRLK
TALGDLDGLLSADDPAALVEPLDEALRALGHGLSAAELRMLTGNLPQVAQALLDLQRAHT
HLQERTAALEVQVGAEHAALPSLSPGEQVRDYFNRAHNYLPELDERAEALYTELGLTPEN
LRLRLRQRLADRHGLLVQEAPDLHSDKRSVDVQARVLWLPAHLRPGQQAFQMAAQLALLE
CGPLLDARIADAGFEDAERIALSRIGLSNYFAGALVMPYTPFLHSAQASRYDIEWLADRF
GVGFEAVCHRLSTLQRRGAAGLPIFFMRVDRAGNVSKRHSATDFHFSHVGGACPLWIVYE
AFNQPDRILTQIARMPDGRRYFWLARQVTSGPPGYGRPRKTFALAMGCDLRHADQLVYAR
GWDLGAVDDAVRIGPGCLTCERSDCVQRAFPALPRLPATR