Protein Info for Xcc-8004.360.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 163 PF09349: OHCU_decarbox" amino acids 7 to 160 (154 residues), 162.4 bits, see alignment E=6.1e-52 TIGR03164: OHCU decarboxylase" amino acids 10 to 162 (153 residues), 183.9 bits, see alignment E=1.1e-58

Best Hits

Swiss-Prot: 43% identical to URAD_HALVD: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase (HVO_B0301) from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)

KEGG orthology group: None (inferred from 99% identity to xca:xccb100_0305)

Predicted SEED Role

"2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X394 at UniProt or InterPro

Protein Sequence (163 amino acids)

>Xcc-8004.360.1 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase (Xanthomonas campestris pv. campestris strain 8004)
MSVIDANALDTAAFVARYRALFEHSPWVVERAARRRPFDDVFGGLMQVVYDASPDDQLAL
IRAHPELAGKAAIDRTLTAASAAEQASAGLDRLDEDEFHRFHALNHAYRQRFGFPFVICV
RLQDKAGILAELQRRLDAPRNDEIATALAEIGKIVHLRLEALP