Protein Info for Xcc-8004.3536.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: FIG01210913: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 386 PF05048: NosD" amino acids 185 to 339 (155 residues), 54.8 bits, see alignment E=9.1e-19 PF13229: Beta_helix" amino acids 187 to 307 (121 residues), 62.4 bits, see alignment E=4.1e-21 TIGR03804: parallel beta-helix repeat" amino acids 265 to 300 (36 residues), 24.5 bits, see alignment 8.2e-10 amino acids 280 to 306 (27 residues), 22.8 bits, see alignment (E = 2.9e-09)

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcc:XCC1390)

Predicted SEED Role

"FIG01210913: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XAX8 at UniProt or InterPro

Protein Sequence (386 amino acids)

>Xcc-8004.3536.1 FIG01210913: hypothetical protein (Xanthomonas campestris pv. campestris strain 8004)
VGRCRLELNAWCDTLEAVAIGRCIAPIAPLPSLTGIRMPLLARSVSALLPLVFATACSAA
PPAPAGPPAAPVASCTAKVRPGQDLQKAIDKLPQSDTPAVLCVEKGEFPLNGLVSIHRGN
LTVRGKGPATVLRMADGVQQPVLVVGDYENQQPTGVIRNVSIEDMQIVASTGDKEFMPER
PYLSNSAVVVRSGQGIRLAGLQVNKCRSACLLSEYDTREITIERNDVSGAIWDGVSFNRT
AKVTMMNNYIHDNVAAGLTTEHLEDSEIRDNRFERNGSQGIYLSDARRNRFTNNQFDGNK
VAGIFLACAIRYRTPEIMCWDNSMSQDNLFENNRFASNPFTYTIGVDRAANCSAADFKPN
VWRNNQADVAGVDIEPQRYGYCVRHE