Protein Info for Xcc-8004.3367.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: GGDEF family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1011 transmembrane" amino acids 30 to 50 (21 residues), see Phobius details amino acids 779 to 798 (20 residues), see Phobius details PF07494: Reg_prop" amino acids 70 to 92 (23 residues), 17.7 bits, see alignment (E = 6.2e-07) amino acids 363 to 385 (23 residues), 19.1 bits, see alignment (E = 2.1e-07) PF07495: Y_Y_Y" amino acids 706 to 769 (64 residues), 56.7 bits, see alignment 3.8e-19 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 848 to 1008 (161 residues), 140.4 bits, see alignment E=2.3e-45 PF00990: GGDEF" amino acids 851 to 1007 (157 residues), 144.5 bits, see alignment E=5e-46

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcc:XCC1520)

Predicted SEED Role

"GGDEF family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X8M5 at UniProt or InterPro

Protein Sequence (1011 amino acids)

>Xcc-8004.3367.1 GGDEF family protein (Xanthomonas campestris pv. campestris strain 8004)
VMKLGVGARSAGDSGDGATASTRGWGQWQCWLAACVCALLWMCSLAAHAAPSTSARLRDY
AIDSWSSRNGLPHNSLRDIAQTADGYLWFATWEGLVRYNGLEFTVIDRSTRPGLPDNGVG
ALYVDHDDALWLSDARGNLVRHGADGHWRQWPRRADWPQALIHGMTMDADGRMWLLFEGH
GLGCLWPDGRFDYFPPQAGVPLQSSFPRMVFDGRGRLLIGTLDGLIYREPDGRMHRAPAA
FGLPPGLAWPYRAPDGTVWVVAGEQLYRLQGERAQLVHHVPGQGHFTAMLQDRHGDLWLG
SESQGLLRIGSHGVEHLEAGRALPTGRIVSLREDAEGSIWVGANGGLFRLRETLFSSYSQ
RDGLSGDYARALLEDRDGSLWVATTAGLDRLLPDGRIVPVPVATPSGRRLSVLSLALDRR
GDLWVGTYADGVFVLRNGRVLRHFGETDGIPNGHIRAIVIDDADTVWLATQRGVVHLVDG
RRAPLAITGLPDGVVTALASIDGALWIGSVDGAAVVRDGVLQQLPLERLGGARSVFGFQR
VGEDVWISTDRGLYRARRGALARVGLEQGMPVDTVFQLVADRLGNAWISSNRGVLRTELN
TLNAVAEGRGRLGIERYGEIDGMGNAQANGSSGPSMIERADGSVWVVTAGGVSTVDPARL
QRFRERPAPPPLIENVQQGGRPVPWRQQTKLPGGQRLTVSYVGMSFLLPERIEYRTRLDG
LDNTWIERGRQRSVEFIGLPPGRYSLRVAARHPGGAWSPHEAVWAFEVLPLWWQRQDVRL
AGALGALLLLALLYRFLLRRYKTHNARLAELVRKRTEDLQRQAQRLLQANQEKSELLTRL
RIKSDAFERQAHEDALTGLPNRRHFDEALARDLSRARRSGRPLVLAILDIDHFKRINDQY
SHASGDAVLHDVGVLLTAAARASDLPARLGGEEFALLLSDTTLEQAHALCLRIRAQFHAR
HDWGGVEGLQVTFSAGLAELGEEESGSSLMQRADHALYEAKSAGRDRICIG