Protein Info for Xcc-8004.2936.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Amino acid transporters

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 476 transmembrane" amino acids 29 to 49 (21 residues), see Phobius details amino acids 60 to 80 (21 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details amino acids 121 to 141 (21 residues), see Phobius details amino acids 160 to 180 (21 residues), see Phobius details amino acids 190 to 210 (21 residues), see Phobius details amino acids 233 to 254 (22 residues), see Phobius details amino acids 266 to 292 (27 residues), see Phobius details amino acids 312 to 336 (25 residues), see Phobius details amino acids 366 to 384 (19 residues), see Phobius details amino acids 390 to 410 (21 residues), see Phobius details amino acids 422 to 442 (21 residues), see Phobius details amino acids 448 to 467 (20 residues), see Phobius details PF13520: AA_permease_2" amino acids 27 to 443 (417 residues), 204.6 bits, see alignment E=4.3e-64 PF00324: AA_permease" amino acids 33 to 446 (414 residues), 130.8 bits, see alignment E=9.6e-42 PF13906: AA_permease_C" amino acids 420 to 470 (51 residues), 31.5 bits, see alignment 2.3e-11

Best Hits

Swiss-Prot: 46% identical to YHDG_BACSU: Uncharacterized amino acid permease YhdG (yhdG) from Bacillus subtilis (strain 168)

KEGG orthology group: K03294, basic amino acid/polyamine antiporter, APA family (inferred from 100% identity to xca:xccb100_2108)

Predicted SEED Role

"Amino acid transporters"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X864 at UniProt or InterPro

Protein Sequence (476 amino acids)

>Xcc-8004.2936.1 Amino acid transporters (Xanthomonas campestris pv. campestris strain 8004)
MFKQLWATKHPHASHEAADGLGLQRALGPWGLTALGIGAVIGGGIFVITGQAAADHAGPA
IVLSFVLAAICCAFCAMAYAEFAAMVPVSGSAYTYTYATFGELAAWFIGWMLVLEYGVSA
SAVAVSWTGYFLSLLEHFGIHLPAALVSAPLDGKLQRTGAIANLPAAGIVLLLTWLCYVG
IRKSSAMNMAMVILKTGLIILVIAAGWKYVDPANWHPFIPANEAPGKYGMEGVLRGAAMV
FFAYIGFEAVSVAAQESHRPQRDLPIGMMLSLVICTVLYIAMAAVMTGLVPFTQLGTDEP
VVTAVAAHPQLAWLRVVVEVGALIGLSSVVLVMIIGQPRIFMIIARDGLLPAVFTRIHPK
YRTPHINTVITGIGIALLAAVFPLDVLGELTSMGTLIAFAAVCAGVLILRRTHPELPRPF
RMPAAWLICSAGVLSCLALLSAMTLHNWMLMGLWTLVGLVVYFGYGYRHSRLREGR