Protein Info for Xcc-8004.2935.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Amino acid transporters

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 493 transmembrane" amino acids 45 to 67 (23 residues), see Phobius details amino acids 73 to 97 (25 residues), see Phobius details amino acids 116 to 151 (36 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 203 to 226 (24 residues), see Phobius details amino acids 245 to 264 (20 residues), see Phobius details amino acids 284 to 307 (24 residues), see Phobius details amino acids 337 to 359 (23 residues), see Phobius details amino acids 380 to 401 (22 residues), see Phobius details amino acids 407 to 428 (22 residues), see Phobius details amino acids 440 to 461 (22 residues), see Phobius details amino acids 467 to 484 (18 residues), see Phobius details PF00324: AA_permease" amino acids 44 to 458 (415 residues), 144 bits, see alignment E=6.2e-46 PF13520: AA_permease_2" amino acids 44 to 471 (428 residues), 194 bits, see alignment E=4.5e-61

Best Hits

Swiss-Prot: 48% identical to YHDG_BACSU: Uncharacterized amino acid permease YhdG (yhdG) from Bacillus subtilis (strain 168)

KEGG orthology group: K03294, basic amino acid/polyamine antiporter, APA family (inferred from 100% identity to xcb:XC_2367)

Predicted SEED Role

"Amino acid transporters"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X7V3 at UniProt or InterPro

Protein Sequence (493 amino acids)

>Xcc-8004.2935.1 Amino acid transporters (Xanthomonas campestris pv. campestris strain 8004)
MYRMLKSLLRVKPIEPAGRVDAGEPVEGSLQGEATLQRTLTAKHLIMLGIGAVIGAGIFV
MTGQAAANHAGPAVMLSFVFAGIACTFAGLCYAEFAAMMPVSGSAYSYSYATLGEGIAWF
IGWCLVLEYLFAGSSVAVAWSAYLISFITGTLGLPFPTELTNAPLAWINGEFVASGNILN
LPAVLIVAAVSGLCYVGITQSAFINAIVVAIKIAVICLFVGFGAAYIDPANWHPFIPENT
APGVFGWSGVFRAASIVFFAYIGFDAVSTSAGETKDPQRNMPIGILGSLAVCTIIYIIVC
AVLTGLMPYTQLGTAKPVATALEAHPQLTWLKTAVEIGAIAGLSSVVLVMLMAQPRIFYT
MAKDGLMPKLFGKVHPKFHTPYVGTVIVGVVAASLAGLIPLSVLGELVSMGTLLAFATVC
AGVMVLRFTKPELERPFRVPLAMIVCPLGTLACLALFFQAFQEHWKVFVGWTVIGLVIYF
GYGIHHSRLARKA