Protein Info for Xcc-8004.2713.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Nitrate/nitrite transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 60 to 78 (19 residues), see Phobius details amino acids 88 to 107 (20 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 147 to 171 (25 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 224 to 245 (22 residues), see Phobius details amino acids 257 to 275 (19 residues), see Phobius details amino acids 287 to 306 (20 residues), see Phobius details amino acids 312 to 334 (23 residues), see Phobius details amino acids 343 to 366 (24 residues), see Phobius details amino acids 373 to 394 (22 residues), see Phobius details PF07690: MFS_1" amino acids 32 to 359 (328 residues), 139.1 bits, see alignment E=8.7e-45

Best Hits

KEGG orthology group: K02575, MFS transporter, NNP family, nitrate/nitrite transporter (inferred from 99% identity to xca:xccb100_2306)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X7N1 at UniProt or InterPro

Protein Sequence (411 amino acids)

>Xcc-8004.2713.1 Nitrate/nitrite transporter (Xanthomonas campestris pv. campestris strain 8004)
LAIAFGDASMQRSFWRSGHTPTLFASFLYFDLSFMVWYLLGPLQVPIAQALGLDTQQRAL
MVAVPILCGAVLRLVLGMLADRIGAKRAGVVAQLAVIASLFGAWQLGVHSMGQVLLLGVL
LGIAGASFAVALPLASRWYPPEHQCTAMGIAGAGNSGTVLAALFAPMLALAFGYQNVFGL
ACIPLVLTLLVFVLIAREAPIPVARKRWADYGRVLVGNRDAWRFMFFYSVTFGGFSGFAS
ALPGYFHDQFGFDARTAGWATAACVLAGSVMRPLGGVIADRVGGTRALLAVYLLVATLVG
IAGFGAGGATITLGLFVLTLLCLGAGNGAVFQLVPQRFGQDIGVMTGLIGMAGGVGGFAL
AAGLGVLKQHTGSYAIGMWLFAAFALGGWALLAGVKTQWRSEWSTAGAARV