Protein Info for Xcc-8004.2662.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: probable membrane protein YPO3302

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 141 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 33 to 56 (24 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details amino acids 116 to 137 (22 residues), see Phobius details PF09335: VTT_dom" amino acids 27 to 133 (107 residues), 44.1 bits, see alignment E=1.4e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcb:XC_2138)

Predicted SEED Role

"probable membrane protein YPO3302"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X7H7 at UniProt or InterPro

Protein Sequence (141 amino acids)

>Xcc-8004.2662.1 probable membrane protein YPO3302 (Xanthomonas campestris pv. campestris strain 8004)
MTYLSLFALALIAATLLPAQSEAALVALLLDGGSVWGLVAAASAGNVLGSLINWWIGREV
TRFQGRRWFPIKPSALLRAQAWYGRYGKWSLLLSWMPIIGDPLTLAAGVMRERLGVFLML
VTVAKTTRYAVLAWATVGLSR