Protein Info for Xcc-8004.2626.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Replication initiation protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 346 PF23343: REP_ORF2-G2P" amino acids 158 to 261 (104 residues), 106.3 bits, see alignment E=4.3e-35

Best Hits

Swiss-Prot: 99% identical to REP_BPPHL: Replication-associated protein G2P (II) from Xanthomonas phage phiLf

KEGG orthology group: None (inferred from 100% identity to xcc:XCC2075)

Predicted SEED Role

"Replication initiation protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X753 at UniProt or InterPro

Protein Sequence (346 amino acids)

>Xcc-8004.2626.1 Replication initiation protein (Xanthomonas campestris pv. campestris strain 8004)
VADGTCSFCGDTTVYFFPGGLCVSCTSKNARIRMQEQPTQSRELSAFDASVGVMQAATRR
TEIAAEKIQKNKRVVGTSVREFDAAHPIALTAEGQRAALALGLVHYKTSDTRASTTGTVT
IEIDPLQARAQRLRKSVITGARLHDQEAKKGSFRGAWYFLTLTYRDGSDSSPRDVSELFK
RMRGHFNRLKSGRARWNRESFRYVWVGELTQRFRPHYHVMLWVPQGMFFGKVDQRGWWPH
GSSQIEKARNCVGYLAKYASKFTAITAAAFPKGFRTHGCGGLNTESKRELRWWKAPKDAR
EALGGEADIRKAKGGWFDRLTGEFWPSPWKVTFIFGRTFAWKVVQL