Protein Info for Xcc-8004.1901.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 651 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 313 to 336 (24 residues), see Phobius details PF00672: HAMP" amino acids 330 to 382 (53 residues), 58.8 bits, see alignment 7.9e-20 PF00512: HisKA" amino acids 435 to 496 (62 residues), 37.3 bits, see alignment E=3.5e-13 PF02518: HATPase_c" amino acids 545 to 649 (105 residues), 87 bits, see alignment E=1.8e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcb:XC_1526)

Predicted SEED Role

"histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X630 at UniProt or InterPro

Protein Sequence (651 amino acids)

>Xcc-8004.1901.1 histidine kinase (Xanthomonas campestris pv. campestris strain 8004)
MAHQHGNATRREQERHMVKARIYAGITVIVLFGVMSMLYVYRGLADVVGHLTRLEQVDAP
FSIAALEMEKNVGEYAFGVLQYVAQPLPDVRAETSNDSADFSQYHANYMQLSSTRREIEL
GRHLARDFDNLTRIGATLMDKRDGLDVTFEKVNGLLGDIDALVNQQILHVAPTPEPMRRR
TLAALANVEAEAAKLGFWLSAYERRPTALTTRQLLERAAKLDRAIAGYRQLPLQARERRL
AGEVEALHVQVKRGVDALLTGEDAMTALASDFVRLQNHMDDVSDEEIEPLAAKGLTAPQK
EADRIAVRVLNMLGYAIPLYLIVALLVGALLILSIVRPLRKLASGTKAIGAGDLHYRIVE
RGKDEFDDLARQFNLMVTRLQESTVSKALLEESEQKLKLTVTDLRQEIAERERSERERGK
LQAELRRSEAMAAVGALMAGVAHEVRNPLFGISSTLDAMEATFNTGRSGGRHQEVLRREV
RRLNKLMTDLLEYGRPPTEEFSSGRLGNVIAEATRICAPIADAGNVVIDNQADSYDGVLL
LNHGRMLQVFVNLIENAVQHAPAGSRVVITARTLDENGRASVECRVQDAGSGFAPDDLPR
IFDPFFTRRRKGTGLGLAIVQRIVEEHKGTIAGHNSPEGGAVMVMRLPFMG