Protein Info for Xcc-8004.1607.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Histidine kinase/response regulator hybrid protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1186 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 761 to 781 (21 residues), see Phobius details PF07494: Reg_prop" amino acids 35 to 57 (23 residues), 17.6 bits, see alignment (E = 8.5e-07) PF07495: Y_Y_Y" amino acids 691 to 752 (62 residues), 49 bits, see alignment 1.1e-16 PF00512: HisKA" amino acids 807 to 872 (66 residues), 66.3 bits, see alignment 5.2e-22 PF02518: HATPase_c" amino acids 919 to 1032 (114 residues), 100.3 bits, see alignment E=2.2e-32 PF00072: Response_reg" amino acids 1060 to 1168 (109 residues), 68.6 bits, see alignment E=1.3e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to xca:xccb100_1307)

Predicted SEED Role

"Histidine kinase/response regulator hybrid protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X6Z2 at UniProt or InterPro

Protein Sequence (1186 amino acids)

>Xcc-8004.1607.1 Histidine kinase/response regulator hybrid protein (Xanthomonas campestris pv. campestris strain 8004)
MRLLLFVVLAVLAGVPALAEVPAIPRFRIVGPADGLPSTMITAIAQDRAGYLWMTTGDGL
IRYDGAGFKVWRNDPADPRSLRSNLLQAIYIDAQDRIWLALGGAGVAMLSADRATLTAYL
PEKVPELSFGDVYAIAGRGDEIWFGMSTGNVLRLDAKGTFTSLDLAKMDDPLAPSAVYAL
ALDDRDRMWIGTLGGLAYHDGLAAHRVHPDGDDSGINALQWVGQRLWAATDTGLRYMDPS
GVWHTPSWAPMFAAGNRVWTVADAGDGEFWLGTEQGLWHTRPGQPPVPVNNGDSPLVSNR
HVTTIWRSRHGGIWVPLHGRGLAYLREDWRRTAAFKQVNDQGKGLSCSLAPAARSGGLWQ
FDGNGRLLRYDTSSGALIQTGIQAADLGTMQITTALEDSRGKLWLASGEYGLSRLDLRTG
ALEHFSDEGPAEAALWIGEPGDGTVWAAYEQVIQQRDLATGRLLETIDQQHPHGLTEVVS
PQIRKGPDGRMWLSAFGGMYAWQAATRRFVSVPGLKTDETLQAFVVEDATHLWLYRAGSL
ERWSSDGAVWKRERRIRSAEGFPAMDAYGLERDGVGRLWMSGPRGLWRIDPRTPQARIRS
FGVRDGLTSLEFSHRCLMMARNGVLVGGTADGYTVLIDTQAPDVPSFTPAMRLETVSVQL
ADRRRMLPIRGGFSLSPDDRQLRINMRLLSFVDPMANRYRTRLSGFDTGWVDHDASGMRE
FSSLPPGDYVLEMQGIDPLGNASKVQTLEFIVNPPWWRSRFGIAVMVLVGMMLGVLLAAA
YRRRVRMRAQWQLAQHKRELAEQASQAKTRFLATLGHEVRTPMTGVLGMSELLLQTPLDG
RQQGYASAIQSAGKHLLRLVNDALDLARIEAGKLALDDRDFDLRQLIRQVVDLVRPSAEQ
KQLAFECHLDESLPRALHGDANRVQQILLNLLFNAVKFTERGQVRLRVLPLQAGGGGIRV
EVSDTGPGMSEEQRGRLFQRFEQAEGGRTTTRHGGSGLGLAICRELAAAMGGSVGVSSAL
GQGACFVVELPLRWVSTPAPSTTAVARAVPPVHQAPLQLLLVEDDVTVAQVIVGLLQGRG
HHVTHVLHGLAALAEVSARSFDAGLCDLDLPGLDGAALVAQLRARGVCFPIVAVTARADA
DAEPQALAAGCNGFLRKPLTGDLLAQALAQVLADDAMDKAPPETPV