Protein Info for TX73_023660 in Rhodopseudomonas palustris CGA009

Annotation: TRAP transporter large permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 32 to 49 (18 residues), see Phobius details amino acids 58 to 81 (24 residues), see Phobius details amino acids 96 to 119 (24 residues), see Phobius details amino acids 139 to 164 (26 residues), see Phobius details amino acids 171 to 195 (25 residues), see Phobius details amino acids 215 to 238 (24 residues), see Phobius details amino acids 244 to 262 (19 residues), see Phobius details amino acids 273 to 296 (24 residues), see Phobius details amino acids 315 to 347 (33 residues), see Phobius details amino acids 358 to 387 (30 residues), see Phobius details amino acids 400 to 423 (24 residues), see Phobius details PF06808: DctM" amino acids 7 to 418 (412 residues), 291.1 bits, see alignment E=6.6e-91 TIGR00786: TRAP transporter, DctM subunit" amino acids 17 to 424 (408 residues), 299 bits, see alignment E=2.4e-93

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpt:Rpal_5034)

Predicted SEED Role

"TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (429 amino acids)

>TX73_023660 TRAP transporter large permease (Rhodopseudomonas palustris CGA009)
MTTLIVLGLLFVLLAIGTPVGFAMAFSGSVGLLMVGGTGTLFGILETAPLSTVSSYELIT
IPMFLLMAELVLLSGVADALFKTASAWVGRIPGGLGMATALAGAGFGAICGTSTASAATL
SSTSLPAMIKQGYEPKMAAGVVAISGTLAMLIPPSVALVIFGLLAEVNIGQLLIGGIIPA
ALVTATIMATIYILVWLDPSRAPRVASVPWRERFVLLWQIGPMLALFSLVTGTIYLGVAT
PTEASALGAAGALVLAISKGKVTPRTLYKALLSASYGTCMIVTILVGASIFGYFFTLTHV
TQDLVAWVGSLETSRWVIITLILCGYIVLGSFMDQIAILVLTVPIVMPLIKSLGFDPIWF
GVIKIVTAEVGMITPPVGLNCFIVARYAKRPVAEVFHGTFPHFIAHLIAIAIMVAFPSII
LWLPSQMAP