Protein Info for TX73_022780 in Rhodopseudomonas palustris CGA009

Annotation: short-chain fatty acyl-CoA regulator family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 PF13560: HTH_31" amino acids 12 to 69 (58 residues), 44.7 bits, see alignment 3.5e-15 PF12844: HTH_19" amino acids 13 to 71 (59 residues), 37.6 bits, see alignment E=4.8e-13 PF01381: HTH_3" amino acids 16 to 69 (54 residues), 52.7 bits, see alignment 8.9e-18 PF06114: Peptidase_M78" amino acids 193 to 316 (124 residues), 71.9 bits, see alignment E=1.1e-23 PF09856: ScfRs" amino acids 317 to 472 (156 residues), 226.4 bits, see alignment E=4e-71

Best Hits

KEGG orthology group: K07110, (no description) (inferred from 100% identity to rpa:RPA4395)

Predicted SEED Role

"Transcriptional regulator, XRE family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (480 amino acids)

>TX73_022780 short-chain fatty acyl-CoA regulator family protein (Rhodopseudomonas palustris CGA009)
MAGDSGKKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAE
TYDLDLRDLATADEDRFFAELNEIFSDPLFRQIDLPKQELRDLAELCPGVTHSLQRLYAA
YTEARRGETMVAAQMADREQIRYEANPIERIRDLIEANRNYFPELEQAAEAVRDELNIGS
QEMFGALSDRLRERHSITTRIMPVDVMRETLRRFDRHRRQLLISELIDGPGRAFQVAFQT
GLTEHGGVMDAIVHRAGGLEDQARRLYRITLGNYFAAAVMMPYAAFHAAAEQLSYDVNVL
AQRFNAGFEQVCHRLTTLQRPNARGVPFFMLRVDNAGNVSKRFSSGTFPFSKFGGTCPLW
NVHSTFDTPDRLLKQVIELPDGSRYFSIAQMVRRPIAPHPQPQPRFAIGLGCEIRHASKL
IYAAGMDLEKAEGTPIGVNCRLCEREHCSQRAEPPITRTLILDENTRRASSFAFSNAREL