Protein Info for TX73_020295 in Rhodopseudomonas palustris CGA009

Annotation: DUF1522 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 886 PF00669: Flagellin_N" amino acids 12 to 115 (104 residues), 35.9 bits, see alignment E=1.2e-12 PF07482: DUF1522" amino acids 339 to 451 (113 residues), 134.6 bits, see alignment E=2.5e-43 amino acids 488 to 593 (106 residues), 142.9 bits, see alignment E=6.8e-46 PF00700: Flagellin_C" amino acids 801 to 885 (85 residues), 25.9 bits, see alignment E=1.6e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA3915)

Predicted SEED Role

"Flagellar hook-associated protein FliD" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (886 amino acids)

>TX73_020295 DUF1522 domain-containing protein (Rhodopseudomonas palustris CGA009)
MADVVLSAAVRQNLLSLQSTADLLATTQNRLASGKKVNTALDNPTNFFTAAGLDSRASDI
NNLLDGIGNGVQILQAANTGITSLNKLIDTAKSIANQALQSNVGYSTKSNVAATIAGATP
NDLRGTQTFASAIATSNVIYDGTAGGTSGVSLTDTLGGGIGSLVGTAVTKNVPTDATSTG
AVLYTGTATATATGTDLISSLTNGSTTTPTGPQAGDVLVVDGKTITFTATGTPTVDSNGN
YTIGVNQPINALLATVDTINGNTSNPSVVNSSGHLELHTGTNRALSVSDTSGGTVLAKLG
FSAPVSTSLGTGASAPITASTKLFNTVGGLGAAIADGTTLTVNGKTITFKASDPPSPAGL
LVGSGVLGNIVADSQGNSTIYLGTSNTFTNATVGDVLTSIDLASGVKSATISGGIATFTA
NGTASSISGAGVVTLNSSTGADLHVTGPADFLKSLNLTTSTGSGPTTLDVPRITGANTIG
TLIDDGSILTVNGKTITFKNAPVPLASATHTGVSGHVETDGLGNSTVYLQGGTVADVLKA
IDLATGVQTATLSQTGATLTTQLGSANSSLSSGSLKISTGSASDLTISGTGNAMLALGLA
GNTGTSTVFQASRASGAGGVSGKTMTFTSFKGGSPVSVTFGDGTGGTVKTLAQLNAALAP
NNLTAQVDANGVLMISASNDYASSTLGSVADGGVLGGSITSTLTFTTPNPPVADLNSQAA
RAKLVEQYNNVIAQITTTSQDASFNGVNLLNGDTLKLVFNETGKSTLTIVGTALTPAALG
LPTLVAGTDFIDNAATNKTLAALNTASTTLRSQASSYGSNLSIVQIRQNFAKSLINVLQT
GSANLTLADTNEEAANSQALSTRQSIAVSALSLANQSQQSVLQLLR