Protein Info for TX73_015380 in Rhodopseudomonas palustris CGA009

Annotation: bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 TIGR00197: YjeF family N-terminal domain" amino acids 6 to 201 (196 residues), 117.8 bits, see alignment E=5e-38 PF03853: YjeF_N" amino acids 25 to 178 (154 residues), 133.2 bits, see alignment E=9.8e-43 TIGR00196: YjeF family C-terminal domain" amino acids 227 to 487 (261 residues), 175.5 bits, see alignment E=1.5e-55 PF01256: Carb_kinase" amino acids 240 to 471 (232 residues), 176.4 bits, see alignment E=7.3e-56

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA2965)

Predicted SEED Role

"NAD(P)HX epimerase / NAD(P)HX dehydratase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (499 amino acids)

>TX73_015380 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase (Rhodopseudomonas palustris CGA009)
MELLTPAEMDRADLLTIAGGSSGFALMLHAGRHVAQAAIEMADEGPILVIAGPGNNGGDG
LIAATELVALGRTVHVMLLGEREALKGDAALAAREWRGPLLPFLTQSIGAPALIIDALFG
SGLNRPVKDQALKVIEAVNHSGVPVLAVDLPSGINGATGAVMGAAIRARETVTFFRRKIG
HLLLPGRLHCGQVRLVDIGIEPGVLGEIRPQAFENDPDLWLPDFPVPRADGHKYGRGHAV
VVSGELSQTGAARLAARGALRAGAGLVTVASPRDALAVNAAALTAVMVRPVDTPDELGTM
LADRRFNAIGIGPGAGIGEETRGKVLAALAAGAAVVLDADALTSFAGHPDELFEAIKSAS
SPQVVLTPHEGEFPRLFSDMSNKNPLRSKLERVRVAAQRSGAVVLLKGADTVVASPDGRA
AIAANAPPWLATAGSGDVLTGIITGLLAQRVPAFEAACIGVWMHGEAACEAGPGLIAEDL
TETMPAVHRRLYGALGIEY