Protein Info for TX73_013880 in Rhodopseudomonas palustris CGA009

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 294 transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 105 to 126 (22 residues), see Phobius details amino acids 138 to 157 (20 residues), see Phobius details amino acids 163 to 183 (21 residues), see Phobius details amino acids 204 to 221 (18 residues), see Phobius details amino acids 226 to 247 (22 residues), see Phobius details amino acids 259 to 281 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 116 to 278 (163 residues), 73.3 bits, see alignment E=1.1e-24

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 100% identity to rpt:Rpal_2953)

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (294 amino acids)

>TX73_013880 ABC transporter permease (Rhodopseudomonas palustris CGA009)
MSLESTVSPSAMSGPAITKAAATVRGSTRQFAKLTARLRTTALALIVPLGLLLVWDLMVR
WTGTRLVPPPSGVATMMWDFAFGGIYDDAYSGSLPIHFWKSVQRVYGGFFLAALLGIPLG
LMIGRIPLLRALLDPTLALLRPIPVTAWLPLSMIFFGLGPKSAVFLVFLGAFYPILLNTV
FGVKSVDVRLFEAAGMLGCSGPQLFRSVVLPAALPSIFNGLRLGASFAWILIVVGEMTGV
PEGLGAVIMDGRTLSRTDLVITGMIIIGITGFLSDRILVSLSNYFLRWSPQHHA