Protein Info for TX73_013595 in Rhodopseudomonas palustris CGA009

Annotation: alpha/beta hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF00561: Abhydrolase_1" amino acids 52 to 312 (261 residues), 85.9 bits, see alignment E=7.2e-28 PF12697: Abhydrolase_6" amino acids 53 to 319 (267 residues), 59.1 bits, see alignment E=2.1e-19 PF12146: Hydrolase_4" amino acids 76 to 312 (237 residues), 71.2 bits, see alignment E=1.7e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA2626)

Predicted SEED Role

"possible hydrolase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (328 amino acids)

>TX73_013595 alpha/beta hydrolase (Rhodopseudomonas palustris CGA009)
MLAVVLWPIASAKAEAEIVNDDFKIKSSAPGIELFVRNKRPAGTDVSRGDRTVLYVHGAT
LASELVFDLPVGGASWADDLARAGWDVWLVDVRGYGRSTWPEALRAPAESNPPVATTAEA
VADFTSAADFIRAKRKIDSLQVIGWSWGGVISGAYAAANPDKVSSLVLVAPLWAFDKPVT
AGPPKKAWQEWTLADSRARIQKGVPAEQAKLILPDSTVALWEKAMRDSQPEAAGRTPELF
RSPTGVAADVSWQAQQPYDAAAIKARTLIIRGEWDDLTPRSLQLALFGQLKNAKIRELIE
IPAASHFIIVEKARDRLFDEVRNFLSRH