Protein Info for TX73_013310 in Rhodopseudomonas palustris CGA009

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1043 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 387 to 411 (25 residues), see Phobius details amino acids 431 to 451 (21 residues), see Phobius details amino acids 463 to 484 (22 residues), see Phobius details amino acids 529 to 548 (20 residues), see Phobius details amino acids 858 to 876 (19 residues), see Phobius details amino acids 883 to 903 (21 residues), see Phobius details amino acids 909 to 934 (26 residues), see Phobius details amino acids 955 to 975 (21 residues), see Phobius details amino acids 987 to 1013 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 5 to 1013 (1009 residues), 1064.8 bits, see alignment E=0

Best Hits

KEGG orthology group: K07788, RND superfamily, multidrug transport protein MdtB (inferred from 84% identity to bja:blr4457)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1043 amino acids)

>TX73_013310 efflux RND transporter permease subunit (Rhodopseudomonas palustris CGA009)
MGVSEPFIRRPIATSLLGVALMIGGLLGYLALPVSALPQVDFPTVQVSTQLPGASPDVVA
SLITAPLERQLGQIPSLTAMTSTSSYGVSQVSLQFDLNRDIDGATQDVQAAINAAAGILP
KNLPYPPVYAKVNPADAPVMTLALTSTTVSLRTMSDLADTLMAQRLAQISGVGRVSVLGG
LKPAVRVQADLARLAAYGISMEDLRTAIANANVSGPKGSLDGAQQAYTIAANDQIAAADA
YRPIIVAYRNGSPVTIGDVAQIVDGLENERTGAWYQGTPAVILDIQRQPGANVIDVVKGI
RAEIPRIQRLVPAGVKLTVVSDRTETIRASVHDVQFTLLLSVVLVTLVVLLFLRSMRATI
IAGVALPLSLITSFGVMYFMGFSLDNLSLMALTIGTGFVVDDAIVMIENIVRHMEDGESP
MQAALKGASEIGFTVISLTMSLIAVFIPLLFMSGLVGRMFREFALTLTIAVVTSAIVSLT
LTPMMCSRLLKHARDERQVPGLATITAWIDRGAEAYHRSLLWVLKHQRATLVVTFLTIAA
TLVLYAIAPKGFLPLQDTASITAVTEAGPAVSFAEMKARQTETAQAIEADPDVVGVVSVI
GAGSVNPTPNVGRLVLTLKPRGDRKSDVGEVIERLKQRVAGIPGMTVYFQAVQDVQISTQ
ASRSQYQYTLTATDAALLSQWANRLLAELRRDPLFRDVSTEAQEGGLRAALDVNRERAGQ
LGVSVQAINDTLNDAFAQRQISTIYGQANQYRVVLEAMPVYQQDPSILSKLYVPGNAGAQ
VPISAVAELKRTIAPLAISHQAQFPSVAMSFNLAPDASLGEALKRIETIEKQIGMPGSIV
GVFYGDAAEFSKALAGQPWLILAAIVAIYIVLGVLYESYIHPITILSTLPSAGVGAILAL
MLFGQDLSVIGLIGIILLMGIVKKNAIMMIDFALEAERGQGMSSYEAIVQACRLRFRPIM
MTTLAALFGALPLAVESGTGSELRFPLGISIIGGLLLSQLLTLYTTPVIYLALDRINRKL
ERALPPVPPATPSPPLAGAGEGL