Protein Info for TX73_006235 in Rhodopseudomonas palustris CGA009

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 PF00005: ABC_tran" amino acids 26 to 185 (160 residues), 97.7 bits, see alignment E=2.5e-31 amino acids 303 to 452 (150 residues), 118.9 bits, see alignment E=6.6e-38 PF08352: oligo_HPY" amino acids 236 to 290 (55 residues), 28.5 bits, see alignment 4e-10 amino acids 504 to 529 (26 residues), 17.8 bits, see alignment (E = 8.7e-07)

Best Hits

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein K02032, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to rpt:Rpal_1407)

Predicted SEED Role

"ABC transporter ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (550 amino acids)

>TX73_006235 ABC transporter ATP-binding protein (Rhodopseudomonas palustris CGA009)
MTDNVLEIDNLVVRLGRSGHGDKVIDGISLNVRAGETMCLVGESGSGKSVTSLTTMGLLP
KGVLQASGGEIRLAGENVLAASERRLRQLRASRMAMIFQEPMTALNPVVPVGKQIDEVLR
FHTDLPARERRRRILDMMQQVRLPDVERIFASYPHRLSGGQRQRIMIAMALVLEPKLLIA
DEPTTALDVTTQKQILTLIRELQQAHGTAVLFITHDMGVVAEIADRVAVMRQGRLVETGP
LEAVLRRPQMEYTRNLLSAVPSLVPRAPRPANRTPVVLEANELGKVYRERSLLGRHREVV
AAQDVTLTLHKGRTLGIVGESGSGKSTVARCIVRLIDPTSGGIRLAGREISELSRRLLRP
HRQKIQIIFQDPYRSLNPRVSVGESIAEGPINYGMPRAQAMAKARQLLELVHLPADAISR
FPHQFSGGQRQRIAIARALALDPDVLVADEAVSALDVSVQAQVLNLLDEIQTRLGIALLF
ITHDLRVAAQICDDVAVMEKGRVVEQGPAAEVLTHPKQAYTRQLLEAAPGRHWDFANFRP
VQEAPQAAVS