Protein Info for TX73_005870 in Rhodopseudomonas palustris CGA009

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 transmembrane" amino acids 14 to 34 (21 residues), see Phobius details amino acids 46 to 70 (25 residues), see Phobius details amino acids 80 to 99 (20 residues), see Phobius details amino acids 105 to 128 (24 residues), see Phobius details amino acids 140 to 158 (19 residues), see Phobius details amino acids 170 to 190 (21 residues), see Phobius details amino acids 220 to 243 (24 residues), see Phobius details amino acids 252 to 272 (21 residues), see Phobius details amino acids 284 to 302 (19 residues), see Phobius details amino acids 308 to 327 (20 residues), see Phobius details amino acids 348 to 367 (20 residues), see Phobius details amino acids 373 to 393 (21 residues), see Phobius details PF07690: MFS_1" amino acids 25 to 346 (322 residues), 69.7 bits, see alignment E=1.1e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpt:Rpal_1334)

Predicted SEED Role

"COGs COG0477"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (402 amino acids)

>TX73_005870 MFS transporter (Rhodopseudomonas palustris CGA009)
MSGLRRLVSGPERAVGVLAVTQILCWGMLIYPPVLTMPHLAAAHGWSLAFGMSGFSLALV
ISGILSPIVGGLIDRHGGNVVMAPGALVGALGMVLIAGIDLWPVYFVGWALLGVAMASTL
YDPAFATLARLFGTTARRQITFVTFAGGFASTVGWPATHLLLDNVGWRGTYFAFAAVLAC
VVAPLHGLVLPRKAAPSVAAPSPNPHLMPAEPLRPEGRPFVLIATAFAIYALMLSGVTSN
LLAMFQRGGLDAGTVVTLGALFGPSQVAARLADFLLAGRTHPLWIARGAVGLMACSFAML
AFAGPSVLVAGVFCVAFGAANGVMTIARGSLPLLMFGAQGYGRVIGRIARPALFVQASAP
FIVAAAVERFSDATVIEVGMVCALAALGCFLVLQPPRAAERR