Protein Info for TX73_003925 in Rhodopseudomonas palustris CGA009

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 transmembrane" amino acids 9 to 29 (21 residues), see Phobius details amino acids 99 to 123 (25 residues), see Phobius details amino acids 135 to 160 (26 residues), see Phobius details amino acids 182 to 201 (20 residues), see Phobius details amino acids 243 to 265 (23 residues), see Phobius details amino acids 285 to 309 (25 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 1 to 76 (76 residues), 32.3 bits, see alignment E=9.9e-12 PF00528: BPD_transp_1" amino acids 113 to 316 (204 residues), 138.1 bits, see alignment E=3e-44

Best Hits

Swiss-Prot: 38% identical to Y1031_BRUAB: Putative peptide transport system permease protein BruAb2_1031 (BruAb2_1031) from Brucella abortus biovar 1 (strain 9-941)

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 99% identity to rpx:Rpdx1_0809)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (317 amino acids)

>TX73_003925 ABC transporter permease (Rhodopseudomonas palustris CGA009)
MLAYIARRIVYVVPIVLSVALVCFLLVHITPGDPLVAVLPADASQELAAQLRAAYGFDRP
LPVQFGLWLWKAVHGDLGTSIATGRPVLAEVMRAVSNTVMLAIAAAIIGFSFGLLFGLIA
GYFRDTWIDKLATGIAIAGVSVPHYWLGMVLVIVFSVQLNWLPAVGAGPGGSGQWAWDWA
HLRYLILPAITTSVIPMGIVTRTVRALTGDILSQDFVEALRAKGLRETGVFGHVIKNAAP
TALAVMGLQLGYMLGGSILVETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFVLLN
LSVDIAQALIDPRIKRA