Protein Info for Synpcc7942_2009 in Synechococcus elongatus PCC 7942

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 922 PF13175: AAA_15" amino acids 1 to 44 (44 residues), 37.5 bits, see alignment 4.3e-13 PF13476: AAA_23" amino acids 5 to 273 (269 residues), 57.9 bits, see alignment E=4.7e-19 PF02463: SMC_N" amino acids 523 to 919 (397 residues), 46.3 bits, see alignment E=7.1e-16 PF13304: AAA_21" amino acids 776 to 905 (130 residues), 28.2 bits, see alignment E=3.9e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to syc:syc2086_c)

Predicted SEED Role

"Exonuclease SbcC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q31LN0 at UniProt or InterPro

Protein Sequence (922 amino acids)

>Synpcc7942_2009 hypothetical protein (Synechococcus elongatus PCC 7942)
MEIRSVSLRNFKTHAEAAFEFRLGVNAICGENGAGKTSILEAIAWTLFDFDSGYRKEELR
RQGESNTSVTVGLVSARDGRYYEVQRRSFKNRPDSYQIYDPELGLKLDNLENVSAARLWL
CDHLGFRAGMDLSRLFAEVIGIPQGTFTADFLKTPSDRRRIFDPILGLESYRDAHRQSID
LQRYAEGQQQAIAQQVAILSAEVADLPTLEQQLQEISQSLEQQRSLLRQRQQARQQALTH
LQQIKQQAQQQQQRQQQRQQLEVQRQALEQQQQAQARSRDEAIAAQQILGASREGWQRYQ
SLTEQIQALNGQLRQREQGRRQLSQWQQQLNQLRETAAGLEQQVALQADWQRQIEQRQPD
LQQQEQLEAALRQQQQQQQALSQLEQRRHWLQQRLKAIATEQQSLQQRLSELQGLAVQLA
ELPRCQAEIEQLQARLARADTLGNLAQDRRTQLETFTAAIAQHQQAVTAAQAQLQDLQTA
LPLYQTHLAQVGETLEQGLQLLASQLDDQQAFFAQLGGGDRIALSQQLQQQQQTLAQLRA
LEKQVEQQTLLEQQLQKLQTEQQSLEQERRQLSTELQAAPAVITAIAQTESELQALGDPR
RELQLLRSQLQASAKVVSELQQNQAQQAQLQPQIQPLRDRLEALAELEEQLNQAEQARQQ
AAEDYRRYLQAESISQQLPEREAQLQQTSEQLAQLQAQWQLLQEAIAAEPALDLAILSAA
EQTWQALEGECQRLTGALPGLEQEQQRLQTEIGRRQAAAQTLAEQQQQLEQHQAIGQFIE
TARRIYNQSGPRLSRYFIGEISREGDRLYRELLARPGVALDWTEDYEIRVQESGRWRSFK
TLSGGEQMCAALAVRLALLRVIGQCPIAFFDEPTTNMDLQRRRQLADAIGNLQSFRQLFV
ISHDDTFEHLTENIVRVERQLV