Protein Info for Synpcc7942_1215 in Synechococcus elongatus PCC 7942

Annotation: acyl-CoA dehydrogenase family protein-like

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 PF02771: Acyl-CoA_dh_N" amino acids 10 to 88 (79 residues), 28.9 bits, see alignment E=6.7e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to syc:syc0335_c)

Predicted SEED Role

"Acyl-CoA dehydrogenase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q79PF3 at UniProt or InterPro

Protein Sequence (335 amino acids)

>Synpcc7942_1215 acyl-CoA dehydrogenase family protein-like (Synechococcus elongatus PCC 7942)
MAPRFDLQDLQAWLTAEVQPQAERIDQDPVVLAQVLQAMGDRGWLGFSVPACEEGLALSP
VEVWQAQAAIASASGALAFLQTQHQSAASFLSKHQPSDRRLSGLSYGRPTVGIGFSHLRR
SPSPLQASWHKDHIVLSGELPWLTGWGFFEEFLIAAPLPEGQTLFALIPAQAPEWKVSPL
ALAAMGTTGTVAAQLIITLPRDRLVTILPATWIRDRDRQGTLSPSAFACGLARACLGLLT
ARDADCREVLTAQLGQLEQAIAQALGQADFREALSLRIQALTLMHRCTQAAVFSAAGAAN
SLQNPAQRLYREALAFSVLGLTTELRQEYLSAIAG