Protein Info for Synpcc7942_1113 in Synechococcus elongatus PCC 7942

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 transmembrane" amino acids 10 to 29 (20 residues), see Phobius details amino acids 34 to 52 (19 residues), see Phobius details amino acids 64 to 89 (26 residues), see Phobius details amino acids 154 to 175 (22 residues), see Phobius details amino acids 215 to 233 (19 residues), see Phobius details amino acids 239 to 268 (30 residues), see Phobius details amino acids 274 to 294 (21 residues), see Phobius details amino acids 310 to 341 (32 residues), see Phobius details PF01594: AI-2E_transport" amino acids 16 to 334 (319 residues), 186.6 bits, see alignment E=3.5e-59

Best Hits

KEGG orthology group: None (inferred from 100% identity to syf:Synpcc7942_1113)

Predicted SEED Role

"Protein of unknown function UPF0118"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q31P76 at UniProt or InterPro

Protein Sequence (363 amino acids)

>Synpcc7942_1113 hypothetical protein (Synechococcus elongatus PCC 7942)
MSESDRRISLTTDSLLLIVGLSLILLMLWQLRGLILILMSAIVLAASIAPIVNQLEQWRL
PRWLGVLVAYGGLLAILTGASLLVGPLVISQIQTLLRQLPNLVERVELLSIDIAEQLDLQ
DSPLLPQLVNPQEVAGWVINTSQQLLRQSYGITRGILGGFFSVVLGLLLSSYLVADSKTL
GRGFVRLFAAPWDDRLAALLGPVGQRMGAYIRGRVLVSLLLGIAIALGLRTLGLGDYAIG
LGAIAGFTNLIPFLGPFLGAIPALFVALAQGDSAWLFLWVLLLFVIIQNLESYVLDPLLV
GAAVGIHPLYQLLAVLGGVQLLGIVGAVIAPPWIAGGALLLERLYLQPKDLAKQGLPSEA
TQP