Protein Info for Synpcc7942_0351 in Synechococcus elongatus PCC 7942
Name: ycf22
Annotation: putative ABC transport system substrate-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K02067, putative ABC transport system substrate-binding protein (inferred from 100% identity to syf:Synpcc7942_0351)Predicted SEED Role
"Ycf22 protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q31RD6 at UniProt or InterPro
Protein Sequence (377 amino acids)
>Synpcc7942_0351 putative ABC transport system substrate-binding protein (Synechococcus elongatus PCC 7942) MRSRVVREGSVGLMLVAGVGALAGLIFWLRGVSLGQDRYDVIVEFNDTAGLTVGTPVIYR GVQVGQVIDITAQSNSVLVRIQIQPASLAIPRDSVISAQISSLLGSPNLTIEPKRNIPAE VLAKTQPRSPNCDRAVILCNGSVVEGAQSASFASILTSIATLVSEIEQAKLVNTLSQTSR DASEAARSIRQLSSSLQQQIPPLRETLNAAQGAASQVEAAIAENRQSVRTTLTNLESSSQ ELQDILNSLEPAIDKANSGKLVDNLNELSANLAVASRNIRDVSTALNSPENLLTLQQTLD SARITFQNAQKITTDLNRLTGDPAVIENIRRLINSLGRLLSSTGALQEQVTDLKSLPLLP VSESPAGEAVVRRPNQP