Protein Info for SMc04271 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 TIGR00654: phenazine biosynthesis protein, PhzF family" amino acids 6 to 305 (300 residues), 208.6 bits, see alignment E=6.7e-66 PF02567: PhzC-PhzF" amino acids 8 to 301 (294 residues), 201 bits, see alignment E=1.4e-63

Best Hits

Swiss-Prot: 56% identical to Y1393_RHILO: Uncharacterized isomerase mll1393 (mll1393) from Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)

KEGG orthology group: K06998, (no description) (inferred from 100% identity to smk:Sinme_2017)

Predicted SEED Role

"Phenazine biosynthesis protein PhzF like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92NW9 at UniProt or InterPro

Protein Sequence (305 amino acids)

>SMc04271 hypothetical protein (Sinorhizobium meliloti 1021)
MARRYAIYDVFTERRLAGNPLAVVFEAEGLAEEAMQAIAQEFNLSETVFILRPGNAAHSA
RLRIFTPAHELPFAGHPTVGAAVAIAEAAYGEANSALELMQVLEESVGPVRAAVRLKPGA
ATFAEFDLPRKPIRLHAQLDRQEIADALALKTTQVGFENHVPSFWSAGVPFVMIPLRDVG
AAASVEFDPQRWEHLAPLAEGRLAAAYLYCRGGINHTARFHARMFAPGMGLAEDPATGSA
VAALSGAINFFDGLVDGHHPMLIEQGVEMGRPSFIHLHLDIAEGKIAGARIGGHAVKVAE
GELAV