Protein Info for SMc04126 in Sinorhizobium meliloti 1021

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 377 transmembrane" amino acids 14 to 37 (24 residues), see Phobius details amino acids 57 to 83 (27 residues), see Phobius details amino acids 91 to 106 (16 residues), see Phobius details amino acids 113 to 133 (21 residues), see Phobius details amino acids 145 to 164 (20 residues), see Phobius details amino acids 199 to 225 (27 residues), see Phobius details amino acids 253 to 274 (22 residues), see Phobius details amino acids 280 to 299 (20 residues), see Phobius details amino acids 305 to 325 (21 residues), see Phobius details amino acids 333 to 353 (21 residues), see Phobius details PF02653: BPD_transp_2" amino acids 58 to 346 (289 residues), 117.6 bits, see alignment E=2.8e-38

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 100% identity to sme:SMc04126)

Predicted SEED Role

"Predicted nucleoside ABC transporter, permease 1 component" in subsystem D-ribose utilization or Deoxyribose and Deoxynucleoside Catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92T54 at UniProt or InterPro

Protein Sequence (377 amino acids)

>SMc04126 ABC transporter permease (Sinorhizobium meliloti 1021)
MSTPYAKLPGWVEYGLIPLINLAVAFLVAGLVVLLVGENPLEAAYHLINGAFGRGEYIGF
TLYYATTFIFTGLAVAVAFHAGLFNIGGEGQAYVGGIGVALACLWLDQTMPWYVVFPLAI
VGSAFFGALWAFLPGWLQAKRGSHIVITTIMFNFIASSLMVYLLTRVLKPLGSMAPQTRT
FAEGGQLPKLDWLLSIFGLNIGTAPFNISFLLALAAAFAVWVLIWRTRLGYEMRTMGHSP
SAARYAGISESRITVVAMMISGGLAGMMALNPIMGEQFRMQLDFVQGAGFVGIAVALMGR
SHPGGIIPAAILFGVLYQGGAEIAFEMPSISRDMIVIIQGLVILFAGALENMFRPAITRA
FSARGQRAAAVVQTKGA