Protein Info for SMc04041 in Sinorhizobium meliloti 1021

Annotation: lysophospholipase L2 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 transmembrane" amino acids 120 to 142 (23 residues), see Phobius details PF12146: Hydrolase_4" amino acids 43 to 295 (253 residues), 130.6 bits, see alignment E=9.1e-42 PF00561: Abhydrolase_1" amino acids 45 to 289 (245 residues), 52 bits, see alignment E=1.2e-17 PF12697: Abhydrolase_6" amino acids 62 to 296 (235 residues), 59.6 bits, see alignment E=1.1e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_2877)

Predicted SEED Role

"Lysophospholipase L2 (EC 3.1.1.5)" in subsystem Synechocystis experimental or Triacylglycerol metabolism (EC 3.1.1.5)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.1.5

Use Curated BLAST to search for 3.1.1.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92M32 at UniProt or InterPro

Protein Sequence (327 amino acids)

>SMc04041 lysophospholipase L2 protein (Sinorhizobium meliloti 1021)
MTTLLHSMPENPMPGDPVVGFFDGARNRKIRYAVFRSKAPVIRGTIVLLQGRNESIEKYF
ETIGDLMAAGFWVATFDWRGQGGSERLSPQWTHGHVEDFTDYERDLTIFLDEIVLPDTRL
PFSIVAHSMGALVALSLAPMLASRIDRMVLLAPFVGLGGQAIGERGIAAIATVMRWIGLG
RLALSSDKGNGTPFRGNVLTADDRRYARNLALIDARPQLRVGPPTARWLSEAFRTIRRVL
KHEHLTRITIPAVILAPTADKLVPYLPVERLASNFRAGHLIPIDGARHELLQEADRYRAQ
AMAAILAFLPGADAEDPASLPRQLEEA